Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6 161 2e-34 seq1221 113 1e-19 >seq6 Length=160627 Score = 161 bits (178), Expect = 2e-34 Identities = 681/1058 (64%), Gaps = 53/1058 (5%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| || || Sbjct 12711 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCATCGAG 12770 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 12771 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 12830 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || ||| | || | |||| | ||||| |||| ||| || | || Sbjct 12831 CTTCCACACCTGGCCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCATCGTCGA 12890 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTG-------GAGTTCAGCGATACCT 319222 || || |||||||| ||||| ||| | || | | ||| || || ||| Sbjct 12891 CTTACCGGCACCGTTGGGGCCCAGAACAGCAATACGGCTCGACAGAGCGCA-CGTCACC- 12948 Query 319223 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 319281 | | | |||| || | | | || | || || || |||| | || ||| Sbjct 12949 --GAAATGTTGTTGATCGACG----GCTTGACAGTGCCGGGGTACTGGTACGA-ACAGTT 13001 Query 319282 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 319340 ||| || || |||| |||| |||| | | ||||| |||||||| || Sbjct 13002 CGTCAGACGAATAATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCGGGCTCCGG 13061 Query 319341 GAACTTCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACG 319397 |||| | || | | ||| || ||| || |||||||| | | ||||| Sbjct 13062 GAACGTGAACTTCACGTTCTCCGACTCC---AGCTCGTAGTAAGCCTTAGCCTCGGGCTT 13118 Query 319398 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 319457 || || |||||||| |||||| || |||||||| |||||||||| || | ||||| Sbjct 13119 CTGCTCCACGAACTTGGACAGGTTGCCCTTGTAGATCTTCAGCTTACGGGTC---TCGTA 13175 Query 319458 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 319517 || ||||| |||||| || | ||| ||||| || |||||||| ||||| || | | Sbjct 13176 GTGAATAATGTTGGTGCAGACCGTGTCAAGGAAGCCAGAGTCGTGCGACACCATGATAGA 13235 Query 319518 CGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAG 319577 | |||| | || ||||||| | || |||| ||||| ||| | Sbjct 13236 AGTCACGTTGGTCAGACCCGTCAGGTAGTTCTCCAGCCACGCGACGTTCTTGACATCCAA 13295 Query 319578 ATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 319637 ||||| |||||||| ||||| ||||| | | || ||| | ||||| ||||| || || Sbjct 13296 GTGGTTCGTCGGCTCATCAAGCAGCAGGATGTCAGCCTTCTGCAGCATGGCACGGGCCAG 13355 Query 319638 AGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAAT----TGGGGCAGATTGGCGCT 319693 | |||||||| ||||| || || ||||||||| || |||| | | | || Sbjct 13356 CTCCAGTTTCATCTTCCAACCACCCGAAAGAGTGCCAACGCCCTGGGCCTGCAT----CT 13411 Query 319694 CA-ATATCAAAGCCA-ACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTT 319751 || | | || ||| |||| | || || ||| || | || | |||| Sbjct 13412 CAGAGGTGAAGCCCACACCGG--CAAGGGTGTCCTCGACCTCCTTGCGGGGGG---TGTT 13466 Query 319752 TTCCTTTACTTGTTCATCATTGGCAA---TGAAGTCAATGATAGCCGTGTTAGAATCGGA 319808 ||| | | ||||||| | | ||||||| | | | | | || || || Sbjct 13467 ---CTTCA---GGTCATCATCCACCAGGATGAAGTCCACCACGGACAGCTCAGCCTCCGA 13520 Query 319809 CCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAG-GGGAACCCTT 319867 | | || | ||| || ||| || ||| |||| | || || | ||||| || | Sbjct 13521 AGCCTGCAGGTTGTGCTCAACGAAAATAGTCTTCAGCTCGTC-GCGGCTCGGGAAGCCCT 13579 Query 319868 CAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCAC 319927 | ||||||||||| ||| ||||||||||| || || ||||| ||||| || || | Sbjct 13580 CCAGCTGGCCGTTGGAAATGGCGCGCATCAGCGTCGACTTACCACAACCGTTGGGACCGC 13639 Query 319928 ACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTC 319987 |||||||||| |||| ||||| || || | || | ||||||||| ||||| | | Sbjct 13640 ACAGACCGTAACGGTGACCGCGCTTGAGACGAAGACGGGCGTTGTTCAGCAGAATCATAC 13699 Query 319988 CACCATATGCCAGAGAAAATTCACAATCACACAGATCC 320025 ||||||| || || || || || || | ||||| ||| Sbjct 13700 CACCATAGGCAAGCGAGAACTCGCAGTTGCACAGGTCC 13737 >seq1221 Length=11197 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 10590 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 10531 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10530 CCCACGGTGGGC 10519 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 11134 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 11075 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 11074 CCCACGGTGGGC 11063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057765530761820