Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq46 196 6e-45 >seq46 Length=92734 Score = 196 bits (216), Expect = 6e-45 Identities = 405/591 (69%), Gaps = 14/591 (2%) Strand=Plus/Plus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||||||||||||||| || || || ||||| || | ||| || | || || || Sbjct 3669 AGTGGCTCCACGTGGTTGAGATACACATGTGCGTCACCGATGACATGAACAAACTCGCCA 3728 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 || | || || | | || || | || || ||||| | ||||||||| |||||| Sbjct 3729 GGTTTCAGTCCTGCCACCTGCGCTATCAATCGCGTTAGCAGCGCGTAGCTGGCGATGTTG 3788 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 || || || || || |||||||| ||||||||||||||| |||||| || | ||| ||| Sbjct 3789 AATGGTACGCCGAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCACGACAACTCACCG 3848 Query 145864 CCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCC 145923 | ||||||||||||||||| | | |||||| |||||||| ||||| | || || Sbjct 3849 TCTGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGCAGCGCCATTTCATTGAGATCA 3908 Query 145924 GCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTC---GGGGTTCCTCTTGATCTCC 145980 || |||||||| || | || || | ||| || || ||||||| | | || Sbjct 3909 GCGGGGTTCCACGCCGACAGCACAA---TCCGGCGGTCAGTGGGGTTCGTACGCAGCTTG 3965 Query 145981 CCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCAC 146039 |||| || ||||||||||||||| || || || || | | || | || | Sbjct 3966 TGAATCACCTCTGCGAGCTGGTCCACGCCTTGGCCAGTATAGTCCG-CATGCATGTTCGT 4024 Query 146040 GTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTC 146099 ||| ||| || || || | ||| ||||| || ||||| || || || || || ||| Sbjct 4025 GTATTTGGCACCAAAATGGCGCCATTGGAAACCATAGACCGGTCCAAGATCTCCTACCTC 4084 Query 146100 CCTGTG-CCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCT 146158 || ||| | || || | | | ||| | || || || || ||| |||||||||| | Sbjct 4085 CC-GTGACTGCAATCCTCTACTGTCCAGGTACTCACGCGATCCATTGCCGTCCCAGATAT 4143 Query 146159 TGACGCCCCTC-GCGGAGAGC-TCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAG 146216 | || || || || ||| | || | | |||| || || |||||||| ||||| Sbjct 4144 GAATATCCTTCTGCTGA-AGCGTGTGTGCACT-CGTGTCGCCACTAATGAACCACAGCAG 4201 Query 146217 CTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAA 146267 ||| || || || | |||||| |||||||| || ||||||| ||||| Sbjct 4202 CTCCTCCGCCACACCTCGCCAGAATACCCTCTTAGTCGTCAGCAACGGGAA 4252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590044980108560