Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq21 327 1e-84 seq322 154 2e-32 seq837 127 2e-24 seq552 127 2e-24 seq422 102 8e-17 >seq21 Length=112267 Score = 327 bits (362), Expect = 1e-84 Identities = 437/605 (72%), Gaps = 12/605 (2%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 |||||||| ||| |||||| | |||||||| || | | ||| |||||| |||||| Sbjct 21472 GAGAACCCGAACCGCTTCGTGCTCTTCCCCATTCAGGAGCACGACGTGTGGCAGATGTAC 21531 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG-TCCAAGGACACGAG 116709 || ||||||||||| ||||| ||||| | ||||||| |||||||| | || | | | || Sbjct 21532 AAGAAGGCCGAGGCTTCGTTTTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTCAAG 21591 Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||| | | | ||||||||||| || ||| ||||||| ||||| |||||||| Sbjct 21592 -GACTGGGCGAACCTCTCGGACAACGAGCGTCACTTCGTCAAGCATGTGCTCGCCTTTTT 21650 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829 ||| ||||| || |||||||| |||||||| |||| | | ||| | || ||||| Sbjct 21651 CGCGGCCAGTGATGGCATCGTAAACGAGAACCTGGCCATGAACTTCAGCAACGAAGTGCA 21710 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 |||| ||||||| || |||||||||||||| ||||| ||||| |||||| | |||||||| Sbjct 21711 GGTGCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATTGCCATCGAGAACATCCACTCGGA 21770 Query 116890 AATGTATTCGACCCTCATCGACACGTAC-----GTGCGCTCTTCGGAGGAGAAGCTCCGT 116944 | || ||| ||||| ||||||||| | ||| || |||||| || Sbjct 21771 GGTCTACTCGCTGCTCATTGACACGTACATCAAGGACGCCATT-----GAGAAGGACCAC 21825 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 ||| || ||||| ||||| || |||||||| | |||| ||| | ||||| || Sbjct 21826 TTGCTGCGTGCCATTGAGACCATCCCGTGCGTGACGAAGAAAGCCAACTGGGCACTCAAG 21885 Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 ||| || | | | | | | | | ||||| ||| |||| ||||| | || ||| Sbjct 21886 TGGTGCGACCCACGTGTGTCGTCATACCCGGAGCGTCTGCTGGCGTTCGCCTCGGTGGAG 21945 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 ||| ||||||| |||||| ||| | |||| || ||||||||||| |||||||||||| Sbjct 21946 GGCATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATG 22005 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTT 117184 || || || | ||| |||||||| ||| | | || ||||| |||| ||||| Sbjct 22006 CCTGGTCTCAGCTTCTCGAACGAGCTGATCAGCCGTGATGAGGGCATGCACACGGACTTC 22065 Query 117185 GCCTG 117189 ||||| Sbjct 22066 GCCTG 22070 >seq322 Length=35284 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | |||||||| || ||||| | ||||| || | | Sbjct 20310 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCG 20251 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| || || || |||||||| | ||||| Sbjct 20250 GACTCGATCGACAACG-TGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCA 20192 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 20191 GCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAA 20132 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| ||||| || | |||||| Sbjct 20131 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGC 20083 Score = 154 bits (170), Expect = 2e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||| | |||||||| || ||||| | ||||| || | Sbjct 20541 AAGATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCG 20482 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| | ||| | || |||| || || || |||||||| | || Sbjct 20481 TCGGACTCGATCGACAACG-TGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGA 20423 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||||||| || |||| ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 20422 CCAGCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTA 20363 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | |||||||| || ||| ||||| || | |||||| Sbjct 20362 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGC 20311 Score = 149 bits (164), Expect = 6e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | |||||||| || ||||| | ||||| || | | Sbjct 20082 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCG 20023 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| || || || |||||||| | ||||| Sbjct 20022 GACTCGATCGACAACG-TGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCA 19964 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 19963 GCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAA 19904 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | ||||||||||| ||| |||| Sbjct 19903 CATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGCG 19868 >seq837 Length=16651 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || || ||||| || ||||| | ||||| || | Sbjct 6022 AAGATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 6081 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| | ||| | ||||| | ||||| || |||||||| | || Sbjct 6082 TCGGACTCGATCGACAACG-TGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGA 6140 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| ||| | |||| ||| ||||| |||||||| |||| || || | | ||||| Sbjct 6141 CCAGCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTA 6200 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | |||||||| || ||| |||| || | || ||| Sbjct 6201 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 6252 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||||| | ||||| || | | Sbjct 6253 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 6312 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | ||||| | ||||| || |||||||| | ||||| Sbjct 6313 GACTCGATCGACAACG-TGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCA 6371 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| ||| ||||| |||||||| |||| || || | | |||||||| Sbjct 6372 GCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAA 6431 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| |||| || | || ||| Sbjct 6432 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 6480 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||||| | ||||| || | | Sbjct 6481 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 6540 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | ||||| | ||||| || |||||||| | ||||| Sbjct 6541 GACTCGATCGACAACG-TGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCA 6599 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| ||| ||||| |||||||| |||| || || | | |||||||| Sbjct 6600 GCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAA 6659 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | |||||||| || ||| |||| Sbjct 6660 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 6695 >seq552 Length=27436 Score = 127 bits (140), Expect = 2e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || ||||| || |||||||| | ||||| || | || Sbjct 16413 ATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCATCACGCTGGACGTGGAGCCGTCC 16472 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||| ||||| | |||||| Sbjct 16473 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAG 16532 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| |||||||| ||||||||| Sbjct 16533 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCGGACTACAAC 16592 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 16593 ATCCAGAAGG 16602 >seq422 Length=29202 Score = 102 bits (112), Expect = 8e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 14330 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 14271 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| | || ||||| || ||| |||| || | Sbjct 14270 ACTCTGTCGGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGT 14211 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 14210 GGTGGTGGC 14202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515191416804640