Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq46 113 9e-20 >seq46 Length=92734 Score = 113 bits (124), Expect = 9e-20 Identities = 416/632 (66%), Gaps = 20/632 (3%) Strand=Plus/Minus Query 35157 GAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACG 35216 |||| ||||| || || || || ||||||| | || ||||| || ||| | || Sbjct 4317 GAACGGGAACGGGGACGCTGTCGGTTTTTGGGGCTCAGATGAGATTTAGTCTGAGGAACA 4258 Query 35217 ACACTATTCCAGTT-CTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTC 35275 | |||||| ||| || || || |||| | |||||| |||| || | ||| || || Sbjct 4257 ATG-TATTCCCGTTGCTGACGACTAAGAGGGTATTCTGGCGAGGTGTGGCGGAGGAGCTG 4199 Query 35276 TCGTGGTTCATCAGGGGCAATACAGACGC-CAAAGAATTGGCCAAGAAGAAGATACACAT 35334 ||||||||| || ||| | || || || | || || |||| | || || || Sbjct 4198 CTGTGGTTCATTAGTGGCGACACGAGTGCACACACGCTTCAGCA-GAAGGATATTCATAT 4140 Query 35335 CTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGA 35394 |||| ||| ||||| ||||| || | ||||||||||||| || | | | | Sbjct 4139 CTGGGACGGCAATGGATCGCGTGAGTACCTGGACAGTAGAGGATTGCAGTCACGGGAGGT 4080 Query 35395 GGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAAT--ATGAT 35452 |||||| | ||||| || || || ||||||||||| ||||||||||| ||| | || Sbjct 4079 AGGAGATCTTGGACCGGTCTATGGTTTCCAATGGCGCCATTTTGGTGCCAAATACACGA- 4021 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACC 35512 || || | | || |||||||| | || | || || | || | | | | | Sbjct 4020 ACATG-CATGCGGACTATACTGGCCAAGGCGTGGACCAGCTCGCAGAGGTGATTCACAAG 3962 Query 35513 CTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTT 35572 ||| | || || ||| | |||| | || |||| ||||| || ||||| Sbjct 3961 CTGCGTACGAACCCCACTGACCGCCGGATTGTGCTGTCGGCGTGGAACCCCGCTGATCTC 3902 Query 35573 CACCTTATGGCTCTTCCTCCATGCCACATG-ACTGCTCAATTTTATGTGGCTAATGGAGA 35631 | ||||| || || || ||||||||| |||| || || || ||||| | || || Sbjct 3901 AATGAAATGGCGCTGCCGCCGTGCCACATGTTCTGC-CAGTTCTACGTGGCAGACGGTGA 3843 Query 35632 ATTGTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAAT 35689 |||||||||||| |||| ||||| || || ||| || | ||||| || ||||| Sbjct 3842 GTTGTCGTGCCAGATGTACCAGCGCTCGGCCGACATG--GGACTCGGCGTACCATTCAAC 3785 Query 35690 ATTGCATCATACTCTCTTCTGACTCATCTGATGGC-CAGTATGGTGGGTCTAAAACCGGG 35748 || || ||| | || || || | |||| || ||| ||| || || ||||| || Sbjct 3784 ATCGCCAGCTACGCGCTGCTAACGCGATTGATAGCGCAG-GTGGCAGGACTGAAACCTGG 3726 Query 35749 AGAGTTTATCCTCA-CTC-TTGGTGACGCACA 35778 |||||| | ||| || | ||||||||||| Sbjct 3725 CGAGTTTGT--TCATGTCATCGGTGACGCACA 3696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989529302599870