Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq46 163 2e-35 >seq46 Length=92734 Score = 163 bits (180), Expect = 2e-35 Identities = 310/456 (68%), Gaps = 18/456 (4%) Strand=Plus/Plus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 |||||| || ||||| | | | ||||| | | || || || ||||||||| || Sbjct 3632 CGGAAATGGGCGCGGTGCGCGCGTTAGCTGTTTCTGAAGTGGCTCCACGTGGTTGAGATA 3691 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 || || |||||||| | | || ||||| || || || |||| || | || || || Sbjct 3692 CACATGTGCGTCACCGATGACATGAACAAACTCGCCAGGTTTCAGTCCTGCCACCTGCGC 3751 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 |||| ||| || || ||||||||||||||||| || || || ||||| |||||||| Sbjct 3752 TATCAATCGCGTTAGCAGCGCGTAGCTGGCGATGTTGAATGGTACGCCGAGTCCCATGTC 3811 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAA 21127 ||| || | |||||||| |||||| |||| ||| || |||||||| ||||| || || Sbjct 3812 GGCCGAGCGCTGGTACATCTGGCACGACAACTCACCGTCTGCCACGTAGAACTGGCAGAA 3871 Query 21128 AACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAAC 21187 | ||| || || || || ||||| ||| || |||||||||||||| ||| || Sbjct 3872 CATGTGGCACGGCGGCAGCGCCATTTCATTGAGATCAGCGGGGTTCCACGCCGACAGCAC 3931 Query 21188 GATGCGCCGATC-GTGGG--------GCCGCCTGTTAATTAGATCCACCACGTAACGCAG 21238 || || || || ||||| || || ||| ||| | || | || || Sbjct 3932 AATCCGGCGGTCAGTGGGGTTCGTACGCAGCTTGTGAATCA---CCTCTGCG------AG 3982 Query 21239 CTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATG 21298 ||||||||| || || || |||| || | | |||| | || |||||||| Sbjct 3983 CTGGTCCACGCCTTGGCCAGTATAGTCCGCATGCATGTTCGTGTATTTGGCACCAAAATG 4042 Query 21299 TCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 | ||| ||||| || || ||||| || ||||| || Sbjct 4043 GCGCCATTGGAAACCATAGACCGGTCCAAGATCTCC 4078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427753508874720