Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq837 105 7e-18 >seq837 Length=16651 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || | ||| | ||| ||||| || || ||||| || || || Sbjct 6252 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 6193 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||| || ||||| || || || |||| | || ||||| ||||| || Sbjct 6192 CAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGG 6133 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| |||||| || || | | || | | ||| | |||||||| Sbjct 6132 GATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 6073 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||||||||| || || ||||| || ||||| Sbjct 6072 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6025 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || | ||| | ||| ||||| || || ||||| || || || Sbjct 6480 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 6421 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||| || ||||| || || || |||| | || ||||| ||||| || Sbjct 6420 CAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGG 6361 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| |||||| || || | | || | | ||| | |||||||| Sbjct 6360 GATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 6301 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||||||||| || || ||||| || ||||| Sbjct 6300 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6253 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | ||| | ||| ||||| || || ||||| || || ||| Sbjct 6707 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 6648 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || ||||| || || || |||| | || ||||| ||||| || Sbjct 6647 AACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGG 6588 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| |||||| || || | | || | | ||| | |||||||| Sbjct 6587 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 6528 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||||||||| || || ||||| || ||||| Sbjct 6527 TCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496037249748800