Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq608 145 1e-29 >seq608 Length=23317 Score = 145 bits (160), Expect = 1e-29 Identities = 465/717 (65%), Gaps = 6/717 (1%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| |||||||||||||| |||| | |||||| ||| | ||||| | ||| Sbjct 2757 TTCAAACTCGTCTCCCCAGCACTCGTAGAGGCCAGGAGCTTCATTGGGACAGAACAAACT 2698 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 79978 ||||| |||| | | || |||||||| || |||||||| | ||| ||||| || || Sbjct 2697 CCACTTGCCATTGGCTTCCACGCGTTTCATGAACAGATCAGGGACCCACAGAGCGTAGAA 2638 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038 || || | | | ||| |||||| || ||||| || || | |||| | | Sbjct 2637 CAAG-TCACGAGCACGGTGCAACTCGTTGCCGTGGTTCTTACGTAGGTCCAAGAACTCGA 2579 Query 80039 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098 | |||| ||||||||| |||||||| || || | ||| |||||| ||| | Sbjct 2578 AGACGTCAGCATGCCACGGCTCCAAGTAGATAGCGAACGATCCTTTACGTTTGCCTCCGC 2519 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 80158 |||| || | ||| | ||| |||| ||| | || | || |||||| || || ||||||| Sbjct 2518 CCTGGTCCACGTACCGAGCCGTGTCGTTAAACACCCGCAGCATTGGGATGATGCCATTGG 2459 Query 80159 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAG 80216 | | || || || || ||| || || | |||| || || | | | | |||| Sbjct 2458 ACGAGCCGTTCGTGCCTCGGATGTAACTGTTAGTGGCTCGGATGTTGTGCATACTGAT-- 2401 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 || || ||||| ||| ||| ||||| | || || | || | || || |||||||| Sbjct 2400 GCCAATACCCCCAGCCCATTTGGAGATGCACGCACACTGCTTCAGAGTGTCGTAGATGCC 2341 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 ||| ||| || || |||| || | || || |||| || |||| ||| Sbjct 2340 CTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGAGGACAGCTGAGGACGCGGAGT 2281 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 80396 || || || || | || |||| || ||||| || | || | |||| | | ||| Sbjct 2280 GCCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAAGAACTTCTGCGACATCAACTCGTA 2221 Query 80397 CGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 |||||| | ||||| | || | | | || || || | || || ||||| | ||| Sbjct 2220 CGTCTCCAGAGCTGCCTGGATGTTGCTCTTGTGGATGCCCAGAGCCACGCGCATAATCAT 2161 Query 80457 GTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 ||||| || | || |||| ||| ||| | | || | ||| | |||| | || Sbjct 2160 TTGCTGCGGCCGCTCGACGACTTTGCCATTCACTCGGAAGAGGTAGCCTCTTTCGAGTGT 2101 Query 80517 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 |||||| || ||||||| ||| ||||| || |||| || || | |||||||| Sbjct 2100 TTTAAATCCGAAATAGTCGTACTCGAAGTCCCGATCGTGGATGATTGCGGAGTTGAG 2044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718230067354960