Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq608 158 2e-33 >seq608 Length=23317 Score = 158 bits (174), Expect = 2e-33 Identities = 470/718 (65%), Gaps = 8/718 (1%) Strand=Plus/Minus Query 71943 TTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATG 72001 ||| |||||||||||||| ||| | || | |||||| |||||| ||||| | ||| Sbjct 2757 TTCAAACTCGTCTCCCCA-GCACTCGTAGAGGCCAGGAGCTTCATTGGGACAGAACAAAC 2699 Query 72002 ACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATA 72060 ||||| |||| | | || |||||||| || |||||||| | ||| ||||| || | Sbjct 2698 TCCACTTGCCATTGGCTTCCACGCGTTTCATGAACAGATCAGGGACCCACAGAGCGTAGA 2639 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 | || || | | | ||| |||||| || ||||| || || | |||| | Sbjct 2638 ACAAG-TCACGAGCACGGTGCAACTCGTTGCCGTGGTTCTTACGTAGGTCCAAGAACTCG 2580 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | | |||| ||||||||| |||||||| || || | ||| |||||| ||| Sbjct 2579 AAGACGTCAGCATGCCACGGCTCCAAGTAGATAGCGAACGATCCTTTACGTTTGCCTCCG 2520 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 ||||| || | ||| | ||| |||| ||| | || | || |||||| || || |||||| Sbjct 2519 CCCTGGTCCACGTACCGAGCCGTGTCGTTAAACACCCGCAGCATTGGGATGATGCCATTG 2460 Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAAT--TGATA 72298 || | || || || || ||| || || | |||| || || ||| || |||| Sbjct 2459 GACGAGCCGTTCGTGCCTCGGATGTAACTGTTAGTGGCTCGGATGTTGTGCATACTGATG 2400 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358 || || ||||| ||| ||| ||||| | || || | || | || || ||||||| Sbjct 2399 --CCAATACCCCCAGCCCATTTGGAGATGCACGCACACTGCTTCAGAGTGTCGTAGATGC 2342 Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 72418 |||| || || ||| |||| || | || || |||| || |||| || Sbjct 2341 CCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGAGGACAGCTGAGGACGCGGAG 2282 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 | || || || || | || |||| || ||||| || | || | |||| | | || Sbjct 2281 TGCCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAAGAACTTCTGCGACATCAACTCGT 2222 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 ||||||| | ||||| | || | | | || || || | || || ||||| | || Sbjct 2221 ACGTCTCCAGAGCTGCCTGGATGTTGCTCTTGTGGATGCCCAGAGCCACGCGCATAATCA 2162 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | ||||| || | || |||| ||| ||| | | || | |||| | |||| | | Sbjct 2161 TTTGCTGCGGCCGCTCGACGACTTTGCCATTCACTCGGAAGAGGTAGCCTCTTTCGAGTG 2102 Query 72599 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 ||||||| || ||||||| ||| ||||| || |||| || || | || ||||| Sbjct 2101 TTTTAAATCCGAAATAGTCGTACTCGAAGTCCCGATCGTGGATGATTGCGGAGTTGAG 2044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671103008818640