Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq21 143 4e-29 seq78 105 1e-17 seq608 96.9 5e-15 seq46 96.9 5e-15 >seq21 Length=112267 Score = 143 bits (158), Expect = 4e-29 Identities = 589/896 (66%), Gaps = 52/896 (6%) Strand=Plus/Plus Query 124995 CTGTTTCCCAT-CAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 || || ||||| |||| | || ||| | ||| | |||||||| ||||| |||| || || Sbjct 21493 CTCTTCCCCATTCAGG-AGCACGACGTGTGGCAGATGTACAAGAAGGCCGAGGCTTCGTT 21551 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA--CTCGTTTG 125111 |||||||| ||| ||| | || ||| | ||||| | || |||| || ||| | | Sbjct 21552 TTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTCAAGGACTGGGCGAACCTC-TCGG 21610 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 || ||| ||||| | || | ||| | | ||||| || || | | ||||| Sbjct 21611 AC---AAC-GAGCGTCACTTCGTCAAGCATGTGCTCGCCTTTTTCGCGGCCAGTGATGGC 21666 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGT 125229 ||||| ||||| || ||| | || || || ||| || || | || |||| | Sbjct 21667 ATCGTAAACGAGAACCTG--GCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGC-T 21723 Query 125230 CG-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 || ||||| ||||| ||||| || || |||||| | |||||||| | ||||| Sbjct 21724 CGCTGCTTCTACGGCTTCCAGATTGCCATCGAGAACATCCACTCGGAGGTCTACTCGCTG 21783 Query 125289 CTGATTGACATGTACATT-----CGCGATCCGCAACGTAAACACATGCTCTTTAACGCAA 125343 || ||||||| |||||| ||| || || | | ||| |||| | || | Sbjct 21784 CTCATTGACACGTACATCAAGGACGCCATTGAGAAGG--ACCACTTGCTGCGT---GCCA 21838 Query 125344 TCGACACGGTGCCGTCTAT-ACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATG-A 125401 | || || | |||| | ||| | |||| | | |||| | |||| ||| | Sbjct 21839 TTGAGACCATCCCGTGCGTGACGAAGAAAGCCA-ACTGGGCACTCAAGTGGTGCGACCCA 21897 Query 125402 CGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT 125461 || ||| || ||| | || | ||| |||| |||||| | || |||||||||||||| Sbjct 21898 CGTGT-GTCGTCATACCCGGAGCGTCTGCTGGCGTTCGCCTCGGTGGAGGGCATCTTCTT 21956 Query 125462 TTCGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGA 125520 ||||| | || ||| ||||||| ||||||||||||||||| |||||||| || || | Sbjct 21957 CTCGGGCTCCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTCA 22015 Query 125521 CGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTAC 125580 | |||||| | || || || |||||| | ||| ||||| ||| || Sbjct 22016 GCTTCTCGAACGAGCTGATCAGCCGTGATGAGGGCATGCACACGGACTTCGCCTGCCTCA 22075 Query 125581 TGTTTCGCAACTATCTGCGTC--CCGAGTGC---AGATCCAGCGATGAAAAGGTCATCAA 125635 ||| ||| ||| ||| | | ||| ||| || | | || ||| | Sbjct 22076 TGTACTCCAAG---CTG-GTCAACAAACTGCCGGAGAGCC-GTG-TG-------CATGAG 22122 Query 125636 CATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-A 125694 || || || || ||| ||| || || |||||| | || || || || || | Sbjct 22123 -ATCGTGCGTGACGCGGTGGTGATTGAGCACGAGTTTGTGTGTGACTCGCTCCCTGTGGA 22181 Query 125695 GCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTC 125754 || |||| |||||||||| || |||||| ||||||| ||||| ||||| || |||| Sbjct 22182 GC-TGATCGGCATGAACTCGGGCCTCATGTGCCAGTACATCGAGTTCGTGGCTGACCGTC 22240 Query 125755 TACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGA 125814 | |||||| || || |||||| ||| ||| |||||| || || || | ||| Sbjct 22241 TGCTGTACTCACTGGGTGTGTCCAAGATCTACCACGTCAAGAACCCGTTCGACTGGATGG 22300 Query 125815 CCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || || || |||| ||||||||||||||||||||| || |||||||| Sbjct 22301 ACATGATCTCTCTCCAGGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTAC 22356 >seq78 Length=74250 Score = 105 bits (116), Expect = 1e-17 Identities = 439/690 (64%), Gaps = 42/690 (6%) Strand=Plus/Plus Query 127104 GCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCAC 127163 |||| | ||||| | ||||| || || || | || | ||||||||| || |||||||| Sbjct 54679 GCGGAAGAAGATCATACCGGCACGCGGGCCACGCAGCGACTTGTGCGTCGTCGTGGTCAC 54738 Query 127164 AATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAAT-GT 127222 ||||| || ||||| ||||||| || || || | |||| |||| | || Sbjct 54739 GATGTCGCAGTACTCGAAGGGGCT-GGCGTGCTCCTGAGTGGCCACAAGGCCGCTGTAGT 54797 Query 127223 GTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAAT-CGTCTA 127281 | || |||||| ||| |||| || ||| | ||||| |||| ||||| || | Sbjct 54798 GAGCCATATCGCACATGAGCAGGGCGCCATTGTCGTCGGCGATCTTGCGGAAGGCGGCG- 54856 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGAT--TAGCCTAGGTTTGAATA 127339 |||||| || || || ||| ||| ||| | || |||| || ||||| | Sbjct 54857 TAGTCCCAGTCACGCGGGTAGGCGCTGCCACCGCACACAATCATAGCG--GGCTTGAACA 54914 Query 127340 GATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGT 127399 || || |||||| || || || |||||| ||| || |||| | | ||| || Sbjct 54915 GAGCAGCCTGCTCGGCGAGCTTCTCAAAGTCGATGAGACCGGTCTCGGCGTTCACGCGGT 54974 Query 127400 ACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACG---TTGCG-------------- 127442 | |||| ||||| | | || |||||||||||| ||||| Sbjct 54975 AGGGCAGCGACTCGAAGTACACGGACGTAGCGGACACGGCCTTGCGCGTCTTCTCAGCCT 55034 Query 127443 -------------GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGA 127489 ||| ||||| |||||||||||||| |||||| || |||||||||| Sbjct 55035 TGGAGTACGTGTAGAAGCCGTGGGTCAGGTGGCCTCCACTGGGCAGGTCCAGTCCCATGA 55094 Query 127490 TTCTACCGTGCGGTTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGT 127549 | | ||||||| | | | ||||||||||| |||||||| |||||| |||| Sbjct 55095 TGCGGTCGTGCGGGCGCAGCAGAGCCGTGTACACGGCGAAGTTGGCGGGCGAGCCTGAGT 55154 Query 127550 ACGGTTGTACACACACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCT 127609 |||| || || || ||||| | || | || | | || | || |||| Sbjct 55155 ACGGCTGCACGTTGACGCCCCACTTTTCTTCCTCCAGGCCGTAGGCCGTCAGCGCGCGCT 55214 Query 127610 GCTGTGCTAGCAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCC 127667 |||| || | ||||| ||||| | |||||| || || ||||| ||| ||| Sbjct 55215 GCTGGCACAGGATCTCGATCTTGTCGATGATCTCGTTGCCGCCGTAGTAGCGCGCGTTC- 55273 Query 127668 GGGCCTACCCTCCGAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAG 127727 ||| ||||| | |||||||||| |||| ||||| | || || || || | | Sbjct 55274 -GGCAGGCCCTCGGCGTACTTGTTGGTGAGGCACGAGCCCAGACAGTCCATGACGGCGCG 55332 Query 127728 AGTGGTAAAGTTTTCCGATGCGATCAACTC 127757 | || ||||| ||||| ||||| | ||| Sbjct 55333 CGACGTGAAGTTCTCCGAGGCGATGAGCTC 55362 >seq608 Length=23317 Score = 96.9 bits (106), Expect = 5e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| || || | ||| || | |||||| | || Sbjct 3691 TACAAGACGGTGTGGGAGATCAAGCAGAAGTCGGTGCTGGATCTGTCAGCCGACCGTGGC 3750 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | ||||| ||||||||| ||| |||| | | ||||||| || || ||| Sbjct 3751 GCTTACATCTGCCAGAGTCAGTCGCTCAACATCCATATTGCCGACCCGACGATCAGCAAG 3810 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | || || || ||||| ||||| ||||| ||||| |||||||||||||||||||| Sbjct 3811 CTCACATCCATGCACTTCTACGCTTGGAAGAAGGGACTCAAGACGGGCATGTACTA 3866 >seq46 Length=92734 Score = 96.9 bits (106), Expect = 5e-15 Identities = 173/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 70226 TGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTT 70284 ||||| || || ||| | | ||||||| || || ||||| ||| |||| || ||||| Sbjct 3919 TGGAACCCCGCTGATCTCAATGAAATGGCGCTGCCGCCGTGCCACATGTTCTGC-CAGTT 3861 Query 70285 TTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCT 70344 ||| | || || | ||||| ||| ||||| ||| | ||||||||||| || Sbjct 3860 CTACGTGGCAGACGGTGAGTTGTCGTGCCAGATGTACCAGCGCTCGGCCGACATGGGACT 3801 Query 70345 CGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTAC 70404 ||| ||||| || ||||| || ||||| | || | |||| |||| || || | | Sbjct 3800 CGGCGTACCATTCAACATCGCCAGCTACGCGCTGCTAACGCGATTGATAGCGCAGGTGGC 3741 Query 70405 CGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCA 70464 || |||||| | |||||| || || ||| || ||||| || |||||| | || || Sbjct 3740 AGGACTGAAACCTGGCGAGTTTGTTCATGTCATCGGTGACGCACATGTGTATCTCAACCA 3681 Query 70465 CATCGAGCCA 70474 | | |||||| Sbjct 3680 CGTGGAGCCA 3671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741019238382640