Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_004681.1 Length=75931 Score E Sequences producing significant alignments: (Bits) Value seq924 136 2e-27 >seq924 Length=20493 Score = 136 bits (150), Expect = 2e-27 Identities = 394/601 (66%), Gaps = 28/601 (5%) Strand=Plus/Minus Query 66746 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 66805 ||||||||||| ||||||||||| || || || ||| | || ||| ||| | | Sbjct 8552 CGGGTGGTGGAGATCTACGGCCCCGAGAGCTCTGGCAAGACGACGCTGGCTCT----GAG 8497 Query 66806 GTG----GCCAATGCGCAGAAGGCCG---GTGGCAACGCCGCCTACATCGACGCTGAGCA 66858 || || | ||||||||| ||| |||| |||| ||||||||| ||||| Sbjct 8496 TTGCATTGCTCAGGCGCAGAAGACCGAGGGTGGAGTATGTGCCTTCATCGACGCGGAGCA 8437 Query 66859 CTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGT 66918 | || | || | | ||||||||||| || || || ||| ||||| ||| || Sbjct 8436 CGCCATTGATGCGCACTACGCCAAGGCTCTGGGAGTCGACATCGACGCCCTGTACGTCTC 8377 Query 66919 TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA 66978 ||||||||| | || || | || |||||||||| |||| ||| ||| || || | Sbjct 8376 GCAGCCGGACTCAGGTGAAGAAGCGCTGGAGATCGCTGACACGCTCATCAGATCGGGGGC 8317 Query 66979 GCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGG 67038 || | ||||||| | ||| |||||| || || ||||| || || ||||| || || Sbjct 8316 AGTGGACCTCGTCGTGCTGGACAGTGTGGCTGCACTCGTGCCACGTGCAGAGCTGGAGGG 8257 Query 67039 CGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAA 67098 || || || ||| || | | ||||| ||||| |||||| ||||| ||||||| Sbjct 8256 TGAGATGGGAGACCAGCAGATTGCTCTGCAGGCGCGACTCATGAGTCAGGCGCTGCGCAA 8197 Query 67099 GCTCACTGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCG 67155 | || || | | |||| |||| ||| | | | | | |||||| | || Sbjct 8196 ATTGACCGGGTCGCTGTCCAAATCCAACTGCACCATTA---TTTTCCTGAACCAGATCCG 8140 Query 67156 CGAGAAGATCGGCAACGTGGGCTACGG----CCCGAATGAGACCACCACGGGCGGAAAGG 67211 ||||| | |||| | | || || |||| | | ||| || || || | || Sbjct 8139 TCAGAAGGTGGGCATCAT---CTTTGGGTCTCCCG-AGGTGACGTCC---GGTGGCACGG 8087 Query 67212 CTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAG 67271 | ||| | | |||||| || || || |||| |||| |||| | || ||||| | Sbjct 8086 CGTTGCGCTACTACGCGTCGGTGCGGCTGGACATCCGCCGCAAGACGGCCATCAAGGAGG 8027 Query 67272 GCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGC 67331 |||| ||| ||||||||| || ||| || || | ||||||||||||||| ||| Sbjct 8026 GCGACCAGGTCGTCGGCAACGAGACGGTGGTCAAGGTGGCCAAGAACAAGCTGGCGTCGC 7967 Query 67332 C 67332 | Sbjct 7966 C 7966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242841631474568