Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq322 87.8 1e-12 >seq322 Length=35284 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||| ||||| |||||||| || || || ||||| || || | || | | Sbjct 19868 CGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCG 19927 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| ||| || || | ||||||||||| | || |||||||| || Sbjct 19928 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTA 19987 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||| || || | | |||| ||| || | ||||| || || ||| Sbjct 19988 TCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATC 20047 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| | || || ||||| || |||||| Sbjct 20048 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 20083 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||| |||| |||||||| || || || ||||| || || | || | | Sbjct 20096 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCG 20155 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| ||| || || | ||||||||||| | || |||||||| || Sbjct 20156 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTA 20215 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||| || || | | |||| ||| || | ||||| || || ||| Sbjct 20216 TCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATC 20275 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| | || || ||||| || |||||| Sbjct 20276 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 20311 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||| |||| |||||||| || || || ||||| || || | || | | Sbjct 20324 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCG 20383 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| ||| || || | ||||||||||| | || |||||||| || Sbjct 20384 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTA 20443 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||| || || | | |||| ||| || | ||||| || || ||| Sbjct 20444 TCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATC 20503 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || ||||| | || || ||||| || ||||| || Sbjct 20504 GTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATCTT 20541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318760839669972