Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq608 345 1e-89 >seq608 Length=23317 Score = 345 bits (382), Expect = 1e-89 Identities = 1065/1629 (65%), Gaps = 35/1629 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||| ||||| || || | | ||| ||||| |||| ||| ||| |||| || Sbjct 2245 TTCACGCATGCCACTCCCACGCTCTTCAACGCTGGCACTCCGCGTCCTCAGCTGTCCTCG 2304 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | || ||| ||||||| ||||| ||||| |||| ||||| || ||| | Sbjct 2305 TGCTTCTTGCTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACTCTGAAGCAG 2364 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| || ||||| || || || ||||| | || ||||| | || || Sbjct 2365 TGTGCGTGCATCTCCAAATGGGCTGGGGGTATTGGCATCAGTATGCACAACATCCGAGCC 2424 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||||||||| || ||||| || | || ||||| | | || ||||| || Sbjct 2425 ACTAACAGTTACATCCGAGGCACGAACGGCTCGTCCAATGGCATCATCCCAATGCTGCGG 2484 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || | || || ||||||| |||||||| ||||| || || ||||| |||| Sbjct 2485 GTGTTTAACGACACGGCTCGGTACGTGGACCAGGGCGGAGGCAAACGTAAAGGATCGTTC 2544 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 ||||| || | ||||| ||||| || | || ||||| | || || || || ||| Sbjct 2545 GCTATCTACTTGGAGCCGTGGCATGCTGACGTCTTCGAGTTCTTGGACCTACGTAAGAAC 2604 Query 363907 ACGGGAAAAGAGGAATTG---CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 || || ||| ||| ||||| ||||| ||||||| || || ||||| |||| Sbjct 2605 CACGGCAACGAG---TTGCACCGTGCTCGTGACTTGTTCTACGCTCTGTGGGTCCCTGAT 2661 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 | || ||||| |||||||| || | || ||| | || || || | ||| | Sbjct 2662 CTGTTCATGAAACGCGTGGAAGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAATGAAGCT 2721 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 || || || | ||| ||||| ||||| | || |||| ||||| ||||| || | Sbjct 2722 CCTGGCCTCTACGAGTGCTGGGGAGACGAGTTTGAAACTCTCTACGAGAAGTACGAGAAG 2781 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 |||||| || || ||||| || |||||| |||| ||||| | ||| |||| || Sbjct 2782 GAGGGACGTGCGCGCAAGACGATCAATGCACAGCAGCTGTGGTTCTCGATCTTGGACGCG 2841 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 ||||||||||| || |||| ||| ||||||| || || |||||||||||||||| Sbjct 2842 CAGATTGAGACGGGTGTGCCCTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCCAAC 2901 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||| | | || || || | || ||| | || |||| | || || ||||| Sbjct 2902 CAGCAGAATTTGGGCACGATCCGCTCCAGTAACTTGTGCTGCGAGGTGATGGAGTACACG 2961 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA 364323 | || || ||| || || || ||| | ||||| | || || || || || | Sbjct 2962 TCGCCGGATGAGGTGGCGGTGTGCAACTTGGCGTCCGTAGCACTGCCTAAATTCGTGGAG 3021 Query 364324 GATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT-ACTTGCAATCT 364382 || || ||| || ||||| | || || ||||| | ||| || | || | ||||| Sbjct 3022 GACGGAGTTTTCAACTACCAGAAGCTCTACGACGTGA-CTAAGGTGGTGACCCGTAATCT 3080 Query 364383 CGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGC 364441 | ||||||| ||||||| || ||||| || | || || || | || || || |||| Sbjct 3081 CAACAAGGTGATCGACATCAACTATTA-CCCAGTCGTGGAGGCTCGCAAGTCCAACATGC 3139 Query 364442 GTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGA 364501 | || ||||| | ||| ||||||| ||||| || || |||| ||| || | | || Sbjct 3140 GCCACCGCCCTGTGGGTATTGGTGTTCAGGGTCTGGCCGACGCTTTCATCCTCATGAACT 3199 Query 364502 TGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATT 364561 || || || | ||||| | || || ||| | || || || || || || | Sbjct 3200 ACGCGTTCGAAAGCGAACAGGCTCGCGAGCTGAACAAGAACATTTTCGAGACCATCTACT 3259 Query 364562 TTGCCGCAAT-GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTAT 364620 ||| |||| || | | || ||| ||| | | ||| ||| || | Sbjct 3260 ATGCGTCAATGGAGACGTCCATGGAGATTGCCAAGGAGC-TGGGCCCTTACGAGACGTTC 3318 Query 364621 GAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCT 364680 |||| || ||| | |||| | |||||||| || | ||| ||| | || || Sbjct 3319 CAGGGCTCGCCTGCTAGTAAGGGTATCTTCCAGTTCGACATGTGGGGCGTCTCCCCGTC- 3377 Query 364681 GTCCG----ATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAA 364736 ||||| |||||||||| | |||| ||||||| || || |||| || || Sbjct 3378 GTCCGGCCTGTGGAACTGGGCTGCGCTGAAGGAGAACGTTATCAAACACGGTATCCGTAA 3437 Query 364737 CTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGA 364796 ||| || | || |||||||| |||||||| ||||| |||||||| || ||||| || Sbjct 3438 CTCGCTACTGGTGGCCCCCATGCCTACGGCTTCGACTGCGCAGATCCTGGGCAACAATGA 3497 Query 364797 GTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCC 364856 || | |||| || | ||| || | || ||||| || ||| | || || || | Sbjct 3498 GTCCATCGAGCCCTACACATCGAACATGTACAACCGCCGTGTGCTTGCTGGTGAGTTCAC 3557 Query 364857 GGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCAT 364916 | | || || ||||||||| | ||||| || ||| | || | || ||| || Sbjct 3558 GATCGTGAACAAGTACCTAATGAAGGAGCTGATCGAGCTGGGCATCTG----GAC-GCCC 3612 Query 364917 GAAG-----AACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCA 364971 || | ||| | ||| | || ||| ||||||||||| || ||| ||| Sbjct 3613 GAGGTTCGCAACCAGATCCTGAACGACGGTGGGTCTGTGCAGAA-GGTCAAGGTCATCCC 3671 Query 364972 GAAGATC-TGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GAACTC--TCAT 365027 | | | | | ||| | ||||| || || ||||| || || || ||| || | | Sbjct 3672 GGACAACGTAAAGGACAAGTACAAGACGGTGTGGGAGAT---CAAGCAGAAGTCGGTGCT 3728 Query 365028 TGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCAT 365087 ||| || | ||||| || || |||| ||||| ||||| |||||| | ||| | || Sbjct 3729 GGATCTGTCAGCCGACCGTGGCGCTTACATCTGCCAGAGTCAGTCGCTCAACATCCATAT 3788 Query 365088 GACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCT 365147 | | || || | |||||| ||||||||||| ||||||| ||||| || || Sbjct 3789 TGCCGACCCGACGATCAGCAAGCTCACATCCATGCACTTCTACGCTTGGAAGAAGGGACT 3848 Query 365148 TAAGACAGG 365156 ||||| || Sbjct 3849 CAAGACGGG 3857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303281559573548