Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6 170 4e-37 seq21 123 5e-23 seq1221 102 2e-16 seq173 98.7 2e-15 >seq6 Length=160627 Score = 170 bits (188), Expect = 4e-37 Identities = 448/672 (67%), Gaps = 40/672 (6%) Strand=Plus/Minus Query 279703 CTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCG 279762 |||| |||||||||||||||||||| |||| || | || ||||| || | | || | Sbjct 13387 CTCTTTCGGGTGGTTGGAAGATGAAACTGGAGCTGGCCCGTGCCATGCTGCAGAAGGCTG 13328 Query 279763 ATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAG 279822 | |||| |||||||||||||| || |||||| |||| || ||||| || ||||| | Sbjct 13327 ACATCCTGCTGCTTGATGAGCCGACGAACCACTTGGATGTCAAGAACGTCGCGTGGCTGG 13268 Query 279823 TGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCT 279882 | |||||| || |||||| || || |||| |||| || || ||||||||||||| Sbjct 13267 AGAACTACCTGACGGGTCTGACCAACGTGACTTCTATCATGGTGTCGCACGACTCTGGCT 13208 Query 279883 TCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCA 279939 |||| || | || ||| | ||| |||||||| ||| | || |||||| ||| || Sbjct 13207 TCCTTGACACGGTCTGCACCAACATTATTCACTACGAGACCCGTAAGCTGAAGATCTACA 13148 Query 279940 AGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATG 279999 || ||||||||||| ||||||| || || ||||| || ||||| | Sbjct 13147 AG------GGCAACCTGTCCAAGTTCGTGGAGCAGAAGCCCGAGGCTAAGGCTTACTACG 13094 Query 280000 ACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC- 280058 | ||| || | | || |||| ||||| ||||| || || || | | |||| Sbjct 13093 AGCTGGAGTCGGAGAACGTGAAGTTCACGTTCCCGGAGCCCGGTTTCCTTGCTGACATCA 13034 Query 280059 ACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGC 280118 | | ||| || || | || || | || || || | | || ||| | | Sbjct 13033 AGAACAAGGGTAAGC-CCATTATTCGTC----TGACG--AACTGTTCGTA--CCAGT-AC 12984 Query 280119 CCCAACA-TCTTCAGCAGT--GTCAACTCGCAGGTTTCTATGA-----ACTC-------A 280163 ||| || | | ||| || ||||| | |||| ||| ||| Sbjct 12983 CCCGGCACTGTCAAGCCGTCGATCAAC---AACATTTCGGTGACGTGCGCTCTGTCGAGC 12927 Query 280164 CGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACT 280223 || |||| ||| | || ||||| ||||| |||||||| || | ||||| | ||||| Sbjct 12926 CGTATTGCTGTTCTGGGCCCCAACGGTGCCGGTAAGTCGACGATGATCAAGATGCTGACG 12867 Query 280224 GGCGAGACCCAGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTA 280282 || ||| || | || ||| || | || |||||||| || |||||| | || || Sbjct 12866 GGTGAGGTGGAGCCGAC-GAGCGGCCAGGTGTGGAAGCACCCTTCCATGCGTTTCGCCTA 12808 Query 280283 CGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATA 280342 ||| ||||||||||||||||||||||| ||| ||||| || ||| | ||||| || Sbjct 12807 CGTGGCTCAGCACGCTTTCCACCACATTGAGTCGCACCTCGATGAGACGGCCAACCAGTA 12748 Query 280343 CATTCAGTGGCG 280354 ||| |||||||| Sbjct 12747 CATCCAGTGGCG 12736 Score = 105 bits (116), Expect = 1e-17 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 ||| ||||| |||| || |||||||| || |||||||| | ||||||||| ||| | Sbjct 13737 GGACCTGTGCAACTGCGAGTTCTCGCTTGCCTATGGTGGTATGATTCTGCTGAACAACGC 13678 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| || ||||||| || |||| || ||||| ||||||||| || ||||| Sbjct 13677 CCGTCTTCGTCTCAAGCGCGGTCACCGTTACGGTCTGTGCGGTCCCAACGGTTGTGGTAA 13618 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC 279517 | || || |||||||||||| | ||||| |||||||| || || || Sbjct 13617 GTCGACGCTGATGCGCGCCATTTCCAACGGCCAGCTGGAGGGCTTCCC 13570 >seq21 Length=112267 Score = 123 bits (136), Expect = 5e-23 Identities = 528/820 (64%), Gaps = 16/820 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||||| |||||||| | ||||| ||||||| ||||| || Sbjct 22337 TCGAAAAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATCCAGTCGAACGGGTTCTTG 22278 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TAC-GAAGATGCGGTCTGCCACAAACTCCA 251680 | | ||| ||||| || |||| ||| | ||| ||||| ||||| ||||| | Sbjct 22277 ACGTGGTAGATCTTGGACACACCCAGTGAGTACAGCAGA--CGGTCAGCCACGAACTCGA 22220 Query 251681 GATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAG 251739 ||||| | ||| || | ||||||||||| |||| | ||| ||| | ||||| Sbjct 22219 TGTACTGGCACATGAGGCCCGAGTTCATGCCGATCAGCTCCACAGGGAGC-GAGTCACAC 22161 Query 251740 ATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC 251799 | || || | || | | || || || ||| || | | ||| | | | | Sbjct 22160 ACAAACTCGTGCTCAATCACCACCGCGTCACGCACGATCTCATGCACACGGCTCTCCGGC 22101 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 || ||||| ||||||| ||||||| ||| | | || | ||||| ||||| || Sbjct 22100 AGTTTGTTGACCAGCTTGGAGTACATGAGGCAGGCGAAGTCCGTGTGCATGCCCTCATCA 22041 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||||| | |||||| || | | || |||||||| | || || ||| |||||||| Sbjct 22040 CGGCTGATCAGCTCGTTCGAGAAGCTGAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAG 21981 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGG 251979 ||||| | ||| ||||| || ||||| | | ||||| || | | | || | || Sbjct 21980 AAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCACCGAGGCGAACGCCAGCAGA 21921 Query 251980 CGCTCAGCAAACGAC--TTGTCCTGCGAC-AAGAACTTCTGTGCCCATGCTGCCTTCTTT 252036 ||||| | | ||| | || | | | |||| ||||||| | || ||| || Sbjct 21920 CGCTCCGGGTATGACGACACACGTGGGTCGCACCACTTGAGTGCCCA-GTTGGCTTTCTT 21862 Query 252037 CCAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCC-GCTCGGCATCGTCCT 252094 | ||| ||||| || || || ||| | || || | ||| ||| |||||| Sbjct 21861 CGTCACGCACGGGATGGTCTCAATGGCA-CGCAGCAAGTGGTCCTTCTCAATGGCGTCCT 21803 Query 252095 CGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCT 252154 |||| || |||| || || ||||| | |||||| |||||| ||| || |||| Sbjct 21802 TGATGTACGTGTCAATGAGCAGCGAGTAGACCTCCGAGTGGATGTTCTCGATGGCAATCT 21743 Query 252155 GGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAA 252214 || | | ||||| || || || | ||||| || ||||| | || | Sbjct 21742 GGAAGCCGTAGAAGCAGCGAGCCTCGGGCACCTGCACTTCGTTGCTGAAGTTCATGGCCA 21683 Query 252215 TGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGT 252274 |||||| | || |||||||| ||| | || || ||| | || | ||||| ||||| Sbjct 21682 GGTTCTCGTTTACGATGCCATCACTGGCCGCGAAAAAGGCGAGCACATGCTTGACGAAGT 21623 Query 252275 GACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACTT 252334 ||||||| | ||| ||| || | |||||| | ||| || ||| | | Sbjct 21622 GACGCTCGTTGTCCGAGAGGTTCGC---CCAGTCCTTGAGGTCGTGCACCAGGTCCAGCT 21566 Query 252335 CTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 | || ||||||| || | | | | |||||||||||||| Sbjct 21565 CCTCGGCCGTCCAAAACGAAGCCTCGGCCTTCTTGTACAT 21526 >seq1221 Length=11197 Score = 102 bits (112), Expect = 2e-16 Identities = 70/78 (90%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 142493 GTGGTGAGAT--AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGT 142550 ||| ||| || |||||| |||||||||||||||||||| ||||||||||||| ||||| Sbjct 10603 GTGTTGATATGAAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGT 10544 Query 142551 CGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||| Sbjct 10543 CGTGGGTTCGAGCCCCAC 10526 Score = 102 bits (112), Expect = 2e-16 Identities = 70/78 (90%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 142493 GTGGTGAGAT--AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGT 142550 ||| ||| || |||||| |||||||||||||||||||| ||||||||||||| ||||| Sbjct 11147 GTGTTGATATGAAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGT 11088 Query 142551 CGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||| Sbjct 11087 CGTGGGTTCGAGCCCCAC 11070 >seq173 Length=52550 Score = 98.7 bits (108), Expect = 2e-15 Identities = 202/299 (68%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || ||| | ||||||| || ||||| ||||| ||||| ||||| || || Sbjct 33228 AAGGTGGCACAGCTGGCTGGTTACGTGTCCGAGCATTCTGCATACCACCACGGCGAACAA 33169 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 || ||||||| || || ||||||||||| | ||| || || |||||||| || Sbjct 33168 AGCTTGCAGGGCTGTATCGTGAATATGGCACAGGATTTTGTCGGAAGCAACAACATCCAC 33109 Query 218776 TTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCT 218835 | || || | ||||||||| ||| | ||| | |||| || |||||| || | Sbjct 33108 CTTCTATCGCCTATCGGTCAGTTCGGTACGCGTTTGATGGGCGGCAAGGATGCGGCCAGT 33049 Query 218836 GCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAA---TCAGGCC 218892 || | || || || || || ||| || | ||||| | | | | | || || | Sbjct 33048 GCTCGTTACATTTTCACCAACTTGGAGCAACTCACGCGTCGAATCTACGATCCTCTGGAC 32989 Query 218893 GATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTA 218951 ||||||||||| |||||| | || || || || ||||| ||||| |||||||| Sbjct 32988 AATGATGTGCTC---AAGTATTTGGATGAAGACGGCCAGTCGATCGAGCCAGAGTGGTA 32933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027779988248074