Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq21 334 1e-86 seq608 260 3e-64 >seq21 Length=112267 Score = 334 bits (370), Expect = 1e-86 Identities = 582/840 (69%), Gaps = 15/840 (2%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || || ||||| ||||||||| | ||||||| | ||| Sbjct 21526 ATGTACAAGAAGGCCGAGGCTTCGTTTTGGACGGCCGAGGAGCTGGACCTGGTGCACGAC 21585 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | ||||| | || || || ||||| ||| |||| | | || ||| Sbjct 21586 CTCAAGGACTGGGCGAACCTCTCGGACAACGAGCGTCACTTCGTCAAGCATGTGCTCGCC 21645 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 || ||||| ||| ||| ||||| || || ||||||||||||| | |||| || || Sbjct 21646 TTTTTCGCGGCCAGTGATGGCATCGTAAACGAGAACCTGGCCATGAACTTCAGCAACGAA 21705 Query 42489 GTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCAC 42548 |||||| ||||| ||||||||||||||||||||||| ||||| |||||| | ||| Sbjct 21706 GTGCAGGTGCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATTGCCATCGAGAACATCCAC 21765 Query 42549 TCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAAC 42605 || ||||| ||| | ||||||| ||||||||||| ||| || | ||| || Sbjct 21766 TCGGAGGTCTACTC---GCTGCTCATTGACACGTACATCAAGGACGCCATTGAGAAGGAC 21822 Query 42606 GGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTC 42665 || | ||||| ||||| || || ||| | | |||||| || ||||||| ||| Sbjct 21823 CACTTGCTGCGTGCCATTGAGACCATCCCGTGCGTGACGAAGAAAGCCAACTGGGCACTC 21882 Query 42666 AACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 || ||| ||| | | | | | | ||| | ||| | || || || | || Sbjct 21883 AAGTGGTGCGACCCACGTGTGTCGTCATACCCGGAGCGTCTGCTGGCGTTCGCCTCGGTG 21942 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTC 42784 ||||||||||||||||||||| ||||| ||||||||||||||||||| || || || Sbjct 21943 GAGGGCATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTC 22002 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844 ||||| || |||| |||||||||||| || |||||| | || ||||| |||| | ||| Sbjct 22003 -ATGCCTGGTCTCAGCTTCTCGAACGAGCTGATCAGCCGTGATGAGGGCATGCACACGGA 22061 Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCG 42904 ||| ||||||||| ||| ||| | | ||| |||| | || || || || | Sbjct 22062 CTTCGCCTGCCTCATGTACTCCAAGCTGGTCA---ACAAACTGCCGGAGAGCCGTGTGCA 22118 Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964 | ||| | || || |||| ||| ||| | ||||| | | ||||| || || Sbjct 22119 TGAGATCGTGCGTGACGCGGTGGTGATTGAGCACGAGTTTGTGTGTGACTCGCTCCCTGT 22178 Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCA 43024 | ||| ||||||||||| | |||||||||| |||||||| ||| ||| || |||| Sbjct 22179 GGAGCTGATCGGCATGAACTCGGGCCTCATGTGCCAGTACATCGAGTTCGTGGCTGACCG 22238 Query 43025 TCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCC--GTGCCCCTTCGACTTT 43082 ||| |||| | ||||| | | ||||| |||| | | ||| ||||||| Sbjct 22239 TCTGCTGTACTCACTGGGTGTGTCCAAGATCTAC--CACGTCAAGAACCCGTTCGACTGG 22296 Query 43083 ATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 ||||| | ||||| | |||||||||||||||||||||||||||| || | ||| ||| Sbjct 22297 ATGGACATGATCTCTCTCCAGGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTAC 22356 >seq608 Length=23317 Score = 260 bits (288), Expect = 3e-64 Identities = 1097/1710 (64%), Gaps = 74/1710 (4%) Strand=Plus/Minus Query 243775 CAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAG 243834 || |||||||||||| ||||||||||| | ||| |||| || |||||||| || || Sbjct 3870 CATGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAAGCGTAGAAGTGCATGGATGTGAG 3811 Query 243835 CTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTG 243894 ||| | ||| | |||||| ||| | | || |||||| ||||| ||||| Sbjct 3810 CTTGCTGATCGTC------GGGTCG-----GCA-ATATGGATGTTGAGCGACTGACTCTG 3763 Query 243895 GTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATG-AGGTCC---TTCTGAGATATC 243949 | || | | | |||| || || || | || ||| || || ||||| ||| Sbjct 3762 GCAGATGTAAG-CGCCACGGTCGGCTGACA----GATCCAGCACCGACTTCTGCTTGATC 3708 Query 243950 TCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACC 244009 || || |||||||||| || ||| | || || |||| | | || |||||||| Sbjct 3707 TCCCACACCGTCTTGTACTTGTCCTTTACGTTGTCCGGGATGACCTTGACCTTCTGCACA 3648 Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTC- 244068 || || || | | || |||| |||| | | |||| | ||||| |||| Sbjct 3647 GACCCACCGTCGTTCAGGATCTGGTTGCGAACCTCGGGCGTCCAGATGCCCA---GCTCG 3591 Query 244069 --CAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 |||| ||| | |||| | ||||||| | | ||||| || | ||||| ||||| Sbjct 3590 ATCAGCTCCTTCATTAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGGCGG 3531 Query 244127 TGGTAGAGGTT-GCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGT 244185 | ||| | ||| | || || ||||||||| ||| |||||||||| |||||||| || Sbjct 3530 TTGTACATGTTCGATGTGTAG-GGCTCGATGGACTCATTGTTGCCCAGGATCTGCGCAGT 3472 Query 244186 GCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCG 244245 || || |||||||| | |||||| || ||| | | ||||| | || || Sbjct 3471 CGAAGCCGTAGGCATGGGGGCCACCAGTAGCGAGTTACGGATACCGTG--TTTGATAACG 3414 Query 244246 GAGTC--TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCAC 244303 || | ||| | ||||| ||||| ||| || | || | || ||||||| Sbjct 3413 TTCTCCTTCAGCGCAGCCCAGTTCCACAGGCCGGA-----CGACGGGGA-GACGCCCCAC 3360 Query 244304 ATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTA-GGGACC 244362 ||||| ||||| | | ||||| || | || ||||| | | ||| ||| ||| || Sbjct 3359 ATGTCGAACTGGAAGATACCCTTACTAGCAGGCGAGCCCTGGAACGTCTCGTAAGGGCCC 3300 Query 244363 GTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGAT 244422 | | || ||| | || | | || | | || ||||||||||||||||| || Sbjct 3299 AGCTC-CTTGGCAATCTCCATGGACGTCTCCATTGACGCATAGTAGATGGTCTCGAAAAT 3241 Query 244423 CATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGAC 244482 ||||||||| ||||| |||| ||| ||| | | | ||| | ||||| | Sbjct 3240 GTTCTTGTTCAGCTCGCGAGCCTGTTCGCTTTCGAACGCGTAGTTCATGAGGATGAAAGC 3181 Query 244483 GTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGG 244541 ||||||||| ||||| || || || || | || | ||| ||| ||||||| || | Sbjct 3180 GTCGGCCAGACCCTGAACACCAATACCCACAGGGCGGTGGCGCATGTTGGACTTGCGAGC 3121 Query 244542 CTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGC 244601 || | | || |||||| ||||| |||||||||||||||||| || ||||| | || Sbjct 3120 CTCCACG-ACTGGGTAATAGTTGATGTCGATCACCTTGTTGAGATTACGGGTCACCACCT 3062 Query 244602 GGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCC 244661 |||||| ||| ||| ||| | | | | ||||| Sbjct 3061 TAGTCACGTCGTAGAGCTTCTGGTAGTTGAAAACTCCG---TCCTC-------------- 3019 Query 244662 TCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGG 244721 ||| || | || || ||| |||| |||||| || |||||||| |||| | Sbjct 3018 -CACGAATTTAGGCAGTGCTACGGACGCCAAGTTGCACACCGCCACCTCATCCGGCGACG 2960 Query 244722 TGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGAT 244781 |||||| | | |||| ||| | ||||||| | ||| ||||||| | ||| || | Sbjct 2959 TGTACTCCATCACCTCGCAGCACAAGTTACTGGAGCGGATCGTGCCCAAATTCTGCTGGT 2900 Query 244782 TGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGG 244841 |||||||| |||| ||||||||||| |||||||||||| | || ||||| | ||| | Sbjct 2899 TGGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAAGGGCACACCCGTCTCAATCTGCG 2840 Query 244842 CGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTG 244901 || | | || | ||| || | | || |||| |||| |||| || ||||| Sbjct 2839 CGTCCAAGATCGAGAACCACAGCTGCTGTGCATTGATCGTCTTGCGCGCACGTCCCTCCT 2780 Query 244902 CCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCC-GGGG 244960 |||||| ||| || | || |||||| |||||| ||||| ||||| || | Sbjct 2779 TCTCGTACTTCTCGTAGAGAGTTTCAAACTCGTCTCCCCAGCACTCGTAGAGGCCAGGAG 2720 Query 244961 CACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGG 245020 | | || || | | |||||||| ||| | | | || | | |||||| || Sbjct 2719 CTTCA-TTGGGACAGAACAAACTCCACTTGCCATTGGCTTCCACGCGTTTCATGAACAGA 2661 Query 245021 TCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTC 245080 || |||| ||| || || | ||| | ||| | | | ||| || ||| |||| Sbjct 2660 TCAGGGACCCACAGAGCGTAGAACAAGTCACGAGCACGGTGCAACTCGTTGCCGTGGTTC 2601 Query 245081 TTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGG 245140 || | || ||||| || || |||||||| | ||||| ||||||| ||||| ||||| Sbjct 2600 TTACGTAGGTCCAAGAACTCGAAGACGTCAGCATGCCACGGCTCCAAGTAGATAGCGAAC 2541 Query 245141 GCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGAT 245196 | || || ||| || |||||||||| | | ||||| |||| || | Sbjct 2540 GATCCTTTACGTTTGCCTCCGCCCTGGTCCA----CGTACCGAGCCGTGTCGTTAAACAC 2485 Query 245197 GCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTT 245256 ||||| | || | ||||| || || |||||| ||||| |||||| | | Sbjct 2484 CCGCAGCATTGGGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAACTGTTAGT 2425 Query 245257 GCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCA 245316 | | | || |||| || ||||| | || || || ||||||||| || || Sbjct 2424 GGCTCGGATGTTGTGCATACTGATGCCAATACCCCCAGCCCATTTGGAGATGCACGCACA 2365 Query 245317 GCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCA 245376 ||| | ||||| |||||||| ||| ||| || |||| |||| ||||| Sbjct 2364 CTGCTTCAGAGTGTCGTAGATGCCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCA 2305 Query 245377 GGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 ||||||||||| || || ||| | |||||| || ||||| |||| || || || Sbjct 2304 CGAGGACAGCTGAGGACGCGGAGTGCCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAA 2245 Query 245437 GTAGCGGCT-CGAGAGGAACCCGTACGTCT 245465 | | | || ||| | ||| ||||||||| Sbjct 2244 G-AACTTCTGCGACATCAACTCGTACGTCT 2216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944288276508640