Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_009760.1 Length=218948 Score E Sequences producing significant alignments: (Bits) Value seq3845 84.2 3e-11 >seq3845 Length=1196 Score = 84.2 bits (92), Expect = 3e-11 Identities = 202/299 (68%), Gaps = 10/299 (3%) Strand=Plus/Minus Query 135679 TAGTCACGTTGGTCGAAGTATTCACCAGTATGCCATGCAGAACCTTCGAAGTATTTGTAA 135738 || || |||||||||||||||| || || ||||| | ||||||| ||| | ||| Sbjct 496 TAATCCCGTTGGTCGAAGTATTTGCCTGTTTGCCAATCGGAACCTTGGAATTTCGGATAA 437 Query 135739 GTACCTTTCTCTTTTGCAAGCTCTACGCTTGAGT---CGATTACATGGTACGCAAACTCT 135795 ||||| || || | ||||| | ||| | | ||| | || || || | | Sbjct 436 TGTCCTTTTTCCTTGGACAGCTCCATGCTGGCTTTCACGAGCAGATAGTT---AATTTTT 380 Query 135796 TCATATAATGTATCCGCATAATTTACTGCTGCTTCTGATTCCCAATCTAAT-CCTAAGAT 135854 ||||| | |||| ||| | |||||| |||| ||||||||| | ||| ||| || Sbjct 379 TCATACAGATTATCGTTATATGTGACTGCTTCTTCCGATTCCCAA-CGAATGCCTTCGAG 321 Query 135855 AGCAAGTAGATGATGCCATCCATATGCACCCATTCCAATTGGACGGTAGCGTTTGTTTGT 135914 |||||| || ||||| ||| ||| |||| |||| | |||||| | |||| || Sbjct 320 AGCAAGCAGGTGATGGAGTCCGAATGTTCCCAGACCAACCGCACGGTATTGGCTGTTGGT 261 Query 135915 -TATACCAGCTTGCAGTACGCTGATTGTATTGATGTCGATAATGTTATCAAGCATACGA 135972 ||| |||||||| || || | ||||||||||| | ||| || ||||||||| Sbjct 260 GTATTGG-GCTTGCAGCACTTCAATGTTGTTGATGTCGATTACGTTGTCCAGCATACGA 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700467825235520