Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq837 123 6e-23 seq322 123 6e-23 seq552 111 4e-19 seq30 89.7 1e-12 seq173 87.8 4e-12 >seq837 Length=16651 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || || || | ||| || || ||||| || ||||| Sbjct 6708 TCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 6649 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||| || ||||| || | || || || |||||||| | ||||| || || Sbjct 6648 CAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGG 6589 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||| || |||||||||||| |||||||| || || || || || || || Sbjct 6588 GATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 6529 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 6528 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6481 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || || | ||| || || ||||| || |||| Sbjct 6255 CATG-CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGT 6197 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| || ||||| || | || || || |||||||| | ||||| || Sbjct 6196 CACTCAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGG 6137 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || |||||||||||| |||||||| || || || || || | Sbjct 6136 GCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCT 6077 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 6076 CCACGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6025 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || || | ||| || || ||||| || |||| Sbjct 6483 CATG-CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGT 6425 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| || ||||| || | || || || |||||||| | ||||| || Sbjct 6424 CACTCAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGG 6365 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || |||||||||||| |||||||| || || || || || | Sbjct 6364 GCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCT 6305 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 6304 CCACGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6253 >seq322 Length=35284 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| ||||| || | || || ||||| | ||| || || ||||| || |||||| Sbjct 19855 TCCGCCGCGAAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 19914 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| ||||| || | || || || ||||||||||| || || || | || Sbjct 19915 CAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGG 19974 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||| ||||| || || ||| |||||||| || || || || || || || Sbjct 19975 GATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 20034 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| || |||| ||||| ||||| |||||||| Sbjct 20035 GTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20082 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| || ||||| ||||| || | || || || |||||| Sbjct 20120 TCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 20179 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| || || || | ||||| ||||| ||||| || || ||| |||||||| Sbjct 20180 ATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTG 20239 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || || || || || |||||||||||||| || |||| ||||| ||| Sbjct 20240 TCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACG 20299 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 20300 AAGATCTGCAT 20310 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| || ||||| ||||| || | || || || |||||| Sbjct 20348 TCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 20407 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| || || || | ||||| ||||| ||||| || || ||| |||||||| Sbjct 20408 ATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTG 20467 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || || || || || |||||||||||||| || |||| ||||| ||| Sbjct 20468 TCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACG 20527 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 20528 AAGATCTGCAT 20538 >seq552 Length=27436 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | || ||||| ||||| || | || || || ||||||||| Sbjct 16600 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 16541 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || | |||||||| || || |||||||||||| || || || || Sbjct 16540 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 16481 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| || || || || |||||||| ||||| || ||||| ||||| || || Sbjct 16480 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAAAG 16421 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 16420 ATCTGCATGAT 16410 >seq30 Length=241204 Score = 89.7 bits (98), Expect = 1e-12 Identities = 190/277 (69%), Gaps = 10/277 (4%) Strand=Plus/Minus Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381 ||||| || | ||| || |||||| || || |||| || | |||||||||||| Sbjct 59069 ATATACCGAGGACTAGCAGCATCCTTGCCTCCTTGCAGCCTGGTACCGAACTGGCCTGAT 59010 Query 325382 GGCAACAACCAGTTG-ATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGT 325440 || |||| ||| | | ||| ||| || || | ||||| || | ||| || || || Sbjct 59009 GGATACAA-CAGCGGAAGGTTGTTGGAACCAACGAAGTCCTGCGCCATGTTAACAATCGT 58951 Query 325441 CCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAACCGCTG 325498 | |||| || ||||| || |||||||| || | |||| ||||| |||||| | Sbjct 58950 CGAATGCAACGAAGCTTCACCGTGGTGATAAGCTGTGTGCTCACTGCA--GTAACCCGCG 58893 Query 325499 AACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTT--GAAAGCTGAATATATCACTT 325556 | ||| || |||||||| ||| | |||| ||||||| || || || | | ||| | Sbjct 58892 AGCTGCGCCACCTTCACCTCGCTAGTCAGCCTGCGCTTCAGACAGGCGA--AAAGCACCT 58835 Query 325557 TCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGG 325593 |||| || ||| || | |||||| || ||||| || Sbjct 58834 TCCGCTGCGAAATCTTAAGACCATCGACCACCGATGG 58798 >seq173 Length=52550 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381 || || || ||||| || |||||| || ||| ||| | || ||||||||| || Sbjct 33038 ATGTAACGAGCACTGGCCGCATCCTTGCCGCCCATCAAACGCGTACCGAACTGACCGATA 33097 Query 325382 GGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTC 325441 ||| | | || |||||| |||||||||||| |||||||||| | |||||||| Sbjct 33098 GGCGATAGAAGGTGGATGTTGTTGCTTCCGACAAAATCCTGTGCCATATTCACGATACAG 33157 Query 325442 CCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAAC 325501 || |||| | |||||| ||||| || || |||||| | |||||||| | | Sbjct 33158 CCCTGCAAGCTTTGTTCGCCGTGGTGGTATGCAGAATGCTCGGACACGTAACCAGCCAGC 33217 Query 325502 TGTGCAACCTT 325512 ||||| ||||| Sbjct 33218 TGTGCCACCTT 33228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179589196814892