Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6 158 3e-33 seq173 104 5e-17 seq30 91.5 3e-13 >seq6 Length=160627 Score = 158 bits (174), Expect = 3e-33 Identities = 680/1058 (64%), Gaps = 53/1058 (5%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| || || Sbjct 12711 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCATCGAG 12770 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 12771 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 12830 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || ||| | || | |||| | ||||| |||| ||| || | || Sbjct 12831 CTTCCACACCTGGCCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCATCGTCGA 12890 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTG-------GAGTTCAGCGATACCT 333546 || || ||||| || ||| | ||| |||| | | ||| || || ||| Sbjct 12891 CTTACCGGCACCGTTGGGGCCCAGAACAGCAATACGGCTCGACAGAGCGCA-CGTCACC- 12948 Query 333547 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 333605 | | | |||| || | | | || | || || || |||| | || ||| Sbjct 12949 --GAAATGTTGTTGATCGACG----GCTTGACAGTGCCGGGGTACTGGTACGA-ACAGTT 13001 Query 333606 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 333664 ||| || || |||| |||| |||| | | ||||| |||||||| || Sbjct 13002 CGTCAGACGAATAATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCGGGCTCCGG 13061 Query 333665 GAACTTCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACG 333721 |||| | || | | ||| || ||| || |||||||| | | ||||| Sbjct 13062 GAACGTGAACTTCACGTTCTCCGACTCC---AGCTCGTAGTAAGCCTTAGCCTCGGGCTT 13118 Query 333722 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 333781 || || |||||||| |||||| || |||||||| |||||||||| || | ||||| Sbjct 13119 CTGCTCCACGAACTTGGACAGGTTGCCCTTGTAGATCTTCAGCTTACGGGTC---TCGTA 13175 Query 333782 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 333841 || ||||| |||||| || | ||| ||||| || |||||||| ||||| || | | Sbjct 13176 GTGAATAATGTTGGTGCAGACCGTGTCAAGGAAGCCAGAGTCGTGCGACACCATGATAGA 13235 Query 333842 CGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAG 333901 | |||| | || ||||||| | ||||||| ||||| ||| | Sbjct 13236 AGTCACGTTGGTCAGACCCGTCAGGTAGTTCTCCAGCCACGCGACGTTCTTGACATCCAA 13295 Query 333902 ATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 333961 ||||| |||||||| ||||| || || | | || ||| | ||||| ||||| || || Sbjct 13296 GTGGTTCGTCGGCTCATCAAGCAGCAGGATGTCAGCCTTCTGCAGCATGGCACGGGCCAG 13355 Query 333962 AGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAAT----TGGGGCAGATTGGCGCT 334017 | |||||||| ||||| || || ||||||||| || |||| | | | || Sbjct 13356 CTCCAGTTTCATCTTCCAACCACCCGAAAGAGTGCCAACGCCCTGGGCCTGCAT----CT 13411 Query 334018 CA-ATATCAAAGCCA-ACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTT 334075 || | | || ||| |||| | || || ||| || | || | |||| Sbjct 13412 CAGAGGTGAAGCCCACACCGG--CAAGGGTGTCCTCGACCTCCTTGCGGGGGG---TGTT 13466 Query 334076 TTCCTTTACTTGTTCATCATTGGCAA---TGAAGTCAATGATAGCCATGTTAGAATCGGA 334132 ||| | | ||||||| | | ||||||| | | | || | || || || Sbjct 13467 ---CTTCA---GGTCATCATCCACCAGGATGAAGTCCACCACGGACAGCTCAGCCTCCGA 13520 Query 334133 CCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAG-GGGAACCCTT 334191 | | || | ||| || ||| || ||| |||| | || || | ||||| || | Sbjct 13521 AGCCTGCAGGTTGTGCTCAACGAAAATAGTCTTCAGCTCGTC-GCGGCTCGGGAAGCCCT 13579 Query 334192 CAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCAC 334251 | ||||| ||||| ||| ||||||||||| || || ||||| ||||| || || | Sbjct 13580 CCAGCTGGCCGTTGGAAATGGCGCGCATCAGCGTCGACTTACCACAACCGTTGGGACCGC 13639 Query 334252 ACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTC 334311 |||||||||| |||| || ||||| ||| | || | |||||||| ||||| | | Sbjct 13640 ACAGACCGTAACGGTGACCGCGCTTGAGACGAAGACGGGCGTTGTTCAGCAGAATCATAC 13699 Query 334312 CACCATATGCCAGAGAAAATTCACAATCACACAGATCC 334349 ||||||| || || || || || || | ||||| ||| Sbjct 13700 CACCATAGGCAAGCGAGAACTCGCAGTTGCACAGGTCC 13737 >seq173 Length=52550 Score = 104 bits (114), Expect = 5e-17 Identities = 198/292 (68%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 297342 ACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCGTAT 297401 ||||||| |||||| | ||||| |||| || ||| || || | || || |||| | Sbjct 32937 ACTCTGGCTCGATCGACTGGCCGTCTTCATCCAAATACTTGAGCACATCATTGTCCAGAG 32996 Query 297402 CGACGAAAACCTGTCGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGT 297461 || | | | || || | | | || || |||||||| || || ||||| || Sbjct 32997 GATCGTAGATTCGACGCGTGAGTTGCTCCAAGTTGGTGAAAATGTAACGAGCACTGGCCG 33056 Query 297462 GATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGT 297521 |||||| || ||| ||| | || ||||||||| || ||| | | || ||||| Sbjct 33057 CATCCTTGCCGCCCATCAAACGCGTACCGAACTGACCGATAGGCGATAGAAGGTGGATGT 33116 Query 297522 TATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGC 297581 | |||||||||||| |||||||||| | |||||||| || |||| | ||||| Sbjct 33117 TGTTGCTTCCGACAAAATCCTGTGCCATATTCACGATACAGCCCTGCAAGCTTTGTTCGC 33176 Query 297582 CATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTT 297633 | ||||| || || |||||| | |||||||| | |||||| ||||| Sbjct 33177 CGTGGTGGTATGCAGAATGCTCGGACACGTAACCAGCCAGCTGTGCCACCTT 33228 >seq30 Length=241204 Score = 91.5 bits (100), Expect = 3e-13 Identities = 194/283 (69%), Gaps = 10/283 (4%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 || || ||||| || | ||| || |||||| || || |||| || | |||||||||| Sbjct 59075 GTAAAGATATACCGAGGACTAGCAGCATCCTTGCCTCCTTGCAGCCTGGTACCGAACTGG 59016 Query 297497 CCCTCCGGCAACAACCAGTTG-ATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCAC 297555 || || |||| ||| | | ||| ||| || || | ||||| || | ||| || Sbjct 59015 CCTGATGGATACAA-CAGCGGAAGGTTGTTGGAACCAACGAAGTCCTGCGCCATGTTAAC 58957 Query 297556 GATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAA 297613 || ||| |||| || ||||| || |||||||| || | |||| ||||| |||| Sbjct 58956 AATCGTCGAATGCAACGAAGCTTCACCGTGGTGATAAGCTGTGTGCTCACTGCA--GTAA 58899 Query 297614 CCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTT--GAAAGCTGAATATA 297671 || || ||| || |||||||| ||| | |||| ||||||| || || || | | Sbjct 58898 CCCGCGAGCTGCGCCACCTTCACCTCGCTAGTCAGCCTGCGCTTCAGACAGGCGA--AAA 58841 Query 297672 TCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGG 297714 ||| ||||| || ||| || | |||||| || ||||| || Sbjct 58840 GCACCTTCCGCTGCGAAATCTTAAGACCATCGACCACCGATGG 58798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102819040375900