Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq608 354 8e-93 >seq608 Length=23317 Score = 354 bits (392), Expect = 8e-93 Identities = 1104/1692 (65%), Gaps = 45/1692 (3%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| || || || |||||||| || || ||| || ||| |||| ||||| ||| || Sbjct 2254 GCCACTCCCACGCTCTTCAACGCTGGCACTCCGCGTCCTCAGCTGTCCTCGTGCTTCTTG 2313 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| ||||||||| || || | ||||| || ||| | |||||| | Sbjct 2314 CTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACTCTGAAGCAGTGTGCGTGC 2373 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| |||| || ||||| || || |||||| | ||| || | || |||| Sbjct 2374 ATCTCCAAATGGGCTGGGGGTATTGGCATCAGTATGCACAACATCCGAGCCACTAACAGT 2433 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||||| || || || ||| | ||||| ||| || |||| ||||| ||||| || ||| Sbjct 2434 TACATCCGAGGCACGAACGGCTCGTCCAATGGCATCATCCCAATGCTGCGGGTGTTTAAC 2493 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||| || |||||||||||||| || || | | || || || ||||| |||| Sbjct 2494 GACACGGCTCGGTACGTGGACCAGGGCGGAGGCAAACGTAAAGGATCGTTCGCTATCTAC 2553 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| ||||| || ||||| | ||| | ||||| || ||||||||||||||| Sbjct 2554 TTGGAGCCGTGGCATGCTGACGTCTTCGAGTTCTTGGACCTACGTAAGAACCACGGCAAC 2613 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | | || | ||| | ||||||||||| ||||| || || || || |||||| Sbjct 2614 GAGTTGCACCGTGCTCGTGACTTGTTCTACGCTCTGTGGGTCCCTGATCTGTTCATGAAA 2673 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 ||||| || || | |||||| | || |||||||||||| ||| || || | | Sbjct 2674 CGCGTGGAAGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAATGAAGCTCCTGGCCTCTAC 2733 Query 94372 GACGTTTGTGGA-TCGCGTTTTGAAGACT-TGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 || || ||| || | |||||| ||| | || | ||||| | |||| | Sbjct 2734 GAGTGCTGGGGAGACGAG-TTTGAA-ACTCTCTACGAGAAGTACGAGAAGGAGGGACGTG 2791 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | | ||| || |||| | |||||||| |||| |||||| ||| | |||| Sbjct 2792 CGCGCAAGACGATCAATGCACAGCAGCTGTGGTTCTCGATCTTGGACGCGCAGATTGAGA 2851 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 ||||| ||||| ||| ||| ||||||| | | |||| |||||||||||||||| | Sbjct 2852 CGGGTGTGCCCTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCCAACCAGCAGAATT 2911 Query 94550 TCGGGGTGATCAAGAGCTC---GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 | || |||| |||| || ||||| |||| | | ||||| || || |||| Sbjct 2912 TGGGCACGATC---CGCTCCAGTAACTTGTGCTGCGAGGTGATGGAGTACACGTCGCCGG 2968 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 | ||| | || ||||| ||| ||| ||| | ||| | | |||||| ||| | Sbjct 2969 ATGAGGTGGCGGTGTGCAACTTGGCGTCCGTAGCACTGCCTAAATTCGTG-GAG-GACGG 3026 Query 94667 ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT-- 94724 | || ||| | | | ||| | || | || ||| |||| |||| Sbjct 3027 AGTTTTCAACTAC--CAGAAGCTCT--ACGA-CGTG---ACT-------AAGG-TGGTGA 3070 Query 94725 -CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 | || || |||| ||| ||||||| |||| ||||| ||| |||||| || | Sbjct 3071 CCCGTAATCTCAACAAGGTGATCGACATCAACTATTACCCAGTCGTGGAGGCTCGCAAGT 3130 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || || || || | || || || || |||||| | || ||||| | | Sbjct 3131 CCAACATGCGCCACCGCCCTGTGGGTATTGGTGTTCAGGGTCTGGCCGACGCTTTCATCC 3190 Query 94844 TGATGCGTCTGC-CCTACGACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGA 94901 | ||| || | | | ||| | | || ||| | |||| |||||| ||||| Sbjct 3191 TCATG-AACTACGCGTTCGAAAGCGAACAGGCTCGCGAG-CTGAACAAGAACATTTTCGA 3248 Query 94902 AAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCC 94961 | ||| || || | | | ||| | ||| | | | |||| ||| || || Sbjct 3249 GACCATCTACTATGCGTCAATGGAGACGTCCATGGAGATTGCCA---AGGAGCTGGGCCC 3305 Query 94962 ACACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTCTGG 95019 |||| |||||| || ||||| || | | |||| || || ||||||||| | ||| Sbjct 3306 TTACGAGACGTTCCAGGGCTCGCCTGCTAGTA--AGGGTATCTTCCAGTTCGACATGTGG 3363 Query 95020 GGTGTGAAGCCCTCG---GGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAA 95076 || || || ||| || |||| |||||| || || | | ||||||||| Sbjct 3364 GGCGTCTCCCCGTCGTCCGGCCTGTGGAACTGGGCTGCGCTGAAGGAGAACGTTATCAAA 3423 Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 |||||| | ||| |||| || |||||||||||||| ||||| || || ||||||||| Sbjct 3424 CACGGTATCCGTAACTCGCTACTGGTGGCCCCCATGCCTACGGCTTCGACTGCGCAGATC 3483 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||| ||||| |||| |||| ||| || ||| |||||||| | || ||||| Sbjct 3484 CTGGGCAACAATGAGTCCATCGAGCCCTACACATCGAACATGTACAACCGCCGTGTGCTT 3543 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTG 95256 || || || ||| | || | |||||| |||| | ||| |||| ||||| | Sbjct 3544 GCTGGTGAGTTCACGATCGTGAACAAGTACCTAATGAAGGAGCTGATCGAGCTGGGCATC 3603 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCG 95316 ||| | |||| ||||| | || || | || || || ||||| || | Sbjct 3604 TGGACGCCCGAGGTTCGCAACCAGATCCTGAACGACGGTGGGTCTGTGCAGAAGGTCAAG 3663 Query 95317 CAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTG 95376 || ||||| || | |||| |||||||| |||||||||||| |||| | Sbjct 3664 GTCATCCCGGACAACGTAAAGGACAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGTCG 3723 Query 95377 ATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNN 95436 | || || | | |||| ||| || | | |||||||||||| Sbjct 3724 GTGCTGGATCTGTCAGCCGACCGTGGCGCTTACATCTGCCAGAGTCAGTCGCTCAACATC 3783 Query 95437 NNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAG 95496 || ||||| || | | | || | || |||||| ||||||| |||| ||| Sbjct 3784 CATATTGCCGACCCGACGATCAGCAAGCTCACATCCATGCACTTCTACGCTTGGAAGAAG 3843 Query 95497 GGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTTC 95556 || |||||||| || ||||| || |||| | || || || ||| | || || ||| Sbjct 3844 GGACTCAAGACGGGCATGTACTACATGCGCGGGCGCCCGAAAGCCGACGCTATCCAATTC 3903 Query 95557 GCCCTAGAAAAG 95568 || | || ||| Sbjct 3904 ACCGTGGACAAG 3915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494696522051440