Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq21 127 2e-24 seq837 120 3e-22 seq552 105 7e-18 seq322 96.9 3e-15 >seq21 Length=112267 Score = 127 bits (140), Expect = 2e-24 Identities = 494/762 (65%), Gaps = 37/762 (5%) Strand=Plus/Plus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 ||||||| | || ||||||| ||| | || || ||||| ||| ||| ||||||| | Sbjct 21614 ACGAGCGTCACTTCGTCAAGCATGTGCTCGCCTTTTTCGCGGCCAGTGATGGCATCGTAA 21673 Query 52153 ACATTAACCT---CATCGAGTACATGCAGCGGAACGTTCCGGAACTCGAGGCGCAATACT 52209 || ||||| ||| | | || ||| || | || | || | |||||| | | || Sbjct 21674 ACGAGAACCTGGCCATGAACTTCA-GCAACGAA--GTGCAGGTGCCCGAGGCTCGCTGCT 21730 Query 52210 TTTATAATTTGCA-AGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATT 52268 | || || || | ||| ||||||| | | ||| ||||| | ||| ||||||||| Sbjct 21731 TCTACGGCTTCCAGATTGC-CATCGAGAACATCCACTCGGAGGTCTACTCGCTGCTCATT 21789 Query 52269 GAGCAGCTGATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGTG 52328 || | || || || | ||| ||| ||||| ||| | ||| | | Sbjct 21790 GACACGTACATCAAGGACGCCATTGAGAAGGACCACTTGCTGCGTGCCATTGAGACCATC 21849 Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC----CGC 52384 |||||||| || || || | |||||| | |||||| ||| | || || Sbjct 21850 CCGTGCGTGACGAAGAAAGCCAACTGGGCACTCAAGTGGTGCGAC--CCACGTGTGTCGT 21907 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 || | | ||||| || |||| |||||| || |||||| | || || || ||| Sbjct 21908 CATACCCG--GAGCGTCTGCTGGCGTTCGCCTCGGTGGAGGGCATCTTCTTCTCGGGCTC 21965 Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 ||| | ||||||| | | || | | ||| | ||||| || || | ||| || Sbjct 21966 CTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGTCTCAGCTTCTCGAA 22025 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACTACAA 52561 |||| |||| || || || || ||||||||||||| || |||||| |||| ||| Sbjct 22026 CGAGCTGATCAGCCGTGATGAGGGCATGCACACGGACTTCGCCTGCCTCATGTACTCCAA 22085 Query 52562 GACGCGCGTGACCGAAAAATTGGATTCGGACACGATCC-TGAGCATGT--TCAAG---GA 52615 | | || | | ||| || |||| || || || ||||| || | || Sbjct 22086 GCTG---GTCAAC---AAACTGC---CGGA---GAGCCGTGTGCATGAGATCGTGCGTGA 22133 Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675 ||||||| || || | |||||| | | | |||| || || |||||| | ||||| Sbjct 22134 CGCGGTGGTGATTGAGCACGAGTTTGTGTGTGACTCGCTCCCTGTGGAGCTGATCGGCAT 22193 Query 52676 GAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCT 52735 |||| || ||||||| ||||||||||||| ||||| || |||||| || || Sbjct 22194 GAACTCGGGCCTCATGTGCCAGTACATCGAGTTCGTGGCTGACCGTCTGCTGTACTCACT 22253 Query 52736 CGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCT 52795 || | | ||| || | ||| || ||||| || | ||| ||| || || || Sbjct 22254 GGGTGTGTCCAAGATCTACCACGTCAAGAACCCGTTCGACTGGATGGACATGATCTCTCT 22313 Query 52796 TGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||||||||||||||||| || |||||||| Sbjct 22314 CCAGGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 22355 >seq837 Length=16651 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | |||||||| || ||||||||||| || Sbjct 6480 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 6421 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| |||||| || || || |||| |||||| ||||| ||||| || || Sbjct 6420 CAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGG 6361 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| || || | | || | | ||| | || |||||| Sbjct 6360 GATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 6301 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || |||||||| || || || ||||||||| Sbjct 6300 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 6252 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | |||||||| || ||||||||||| || Sbjct 6252 GCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 6193 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| |||||| || || || |||| |||||| ||||| ||||| || || Sbjct 6192 CAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGG 6133 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| || || | | || | | ||| | || |||||| Sbjct 6132 GATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 6073 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || |||||||| || || || |||||||| Sbjct 6072 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6025 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | |||||||| || ||||||||||| ||| Sbjct 6707 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 6648 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| || || || |||| |||||| ||||| ||||| || || Sbjct 6647 AACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGG 6588 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| || || | | || | | ||| | || |||||| Sbjct 6587 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 6528 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || |||||||| || || || ||||||||| Sbjct 6527 TCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 6480 >seq552 Length=27436 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| || || || ||||||||| || || |||| ||| Sbjct 16602 CCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 16543 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| ||||| || || || || || ||||| |||||| || || | |||| Sbjct 16542 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTG- 16484 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||||| || |||||| || | ||| | || || || ||||| || || ||| Sbjct 16483 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACA 16424 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 16423 AAGATCTGCATG 16412 >seq322 Length=35284 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||||| || | ||| | | |||||||| || ||||||||||||||| Sbjct 19856 CCGCCGCGAAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 19915 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| || || || || | |||| || || || ||||| || || Sbjct 19916 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGG 19975 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || || || || || | | || | | ||| | || |||||| Sbjct 19976 ATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 20035 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || |||| || || || || ||||||||| Sbjct 20036 TCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 20083 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| || | || | | |||||||| || |||||||||||||| Sbjct 20083 GCCGCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 20142 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || |||||| || || || || | |||| || || || ||||| || || Sbjct 20143 CAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGG 20202 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || || || || || | | || | | ||| | || |||||| Sbjct 20203 GATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 20262 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || |||| || || || || ||||||||| Sbjct 20263 GTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATG 20311 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| || | || | | |||||||| || |||||||||||||| Sbjct 20311 GCCGCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 20370 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || |||||| || || || || | |||| || || || ||||| || || Sbjct 20371 CAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGG 20430 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || || || || || | | || | | ||| | || |||||| Sbjct 20431 GATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 20490 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || |||| || || || || |||||||| Sbjct 20491 GTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496235639050080