Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_011421.1 Length=132562 Score E Sequences producing significant alignments: (Bits) Value seq3219 86.0 5e-12 >seq3219 Length=1827 Score = 86.0 bits (94), Expect = 5e-12 Identities = 318/488 (65%), Gaps = 29/488 (6%) Strand=Plus/Plus Query 35780 ACGCATGGATCTTGTTAAGAAAGCATATTGGGTTCTCAGTAATCTTTACATTACTGTAGC 35839 ||| |||||||| |||||| |||| || |||| | || || | ||||| || | ||| Sbjct 1062 ACGTATGGATCTCGTTAAGGAAGCTTACTGGGCAATGAGCAACATGTACATGACAGCAGC 1121 Query 35840 TACACCCACAATGGGGAATGCAGGTAGACCAGATGGTCAGTTAAGCTCG----TGTTTCA 35895 |||||| || ||| ||||| || | | || ||| | | || | || |||| Sbjct 1122 TACACCTACGATGTCCAATGCGGGCAAAAAAG-TGGCCGGACAACTTTCCAGCTGCTTCA 1180 Query 35896 TTGGAACAGTAGAAGATTCCCTAGACAATATCTATGATAATAACAAAGATTCAGCTATGG 35955 ||| || || || |||||||| || |||| ||| |||| |||| ||| | Sbjct 1181 TTGATACCGTGGATGATTCCCTTGAGGGCATCTTCGATTCCAACACAGATGTAGC----G 1236 Query 35956 TGTCTAAGT----TTGGTGGGGGTATCGGGGTTTACATGGGTAAAATCCGTTCACTCAAC 36011 |||| || | || || || ||||| |||||| | |||||| || | | | | Sbjct 1237 CGTCTCAGCAAAATGGGCGGCGGCATCGGCGTTTACCTCGGTAAAGTCAGAGCTCGCG-- 1294 Query 36012 AGTT---ACATCCGTGGTATGAAAGGTA-AGTCTCAAGGTGTTATCCCTTGGATTAAAGG 36067 ||| ||||||| ||| ||| || | ||| || || |||||||||||| Sbjct 1295 -GTTCGGACATCCGGGGTCACAAAAATACAAGCTCT-GGCGTAATCCCTTGGATTCGCCA 1352 Query 36068 GCTTGAAAATACAGCAAATAGTGTAGACCAGCTAGGTCAGCGTAAAGGTGCTATTGCAGT 36127 || | ||||| || || ||||||||||| || ||||||||||| || || || Sbjct 1353 ACTAAATAATACTGCGGTCAGCGTAGACCAGCTTGGAACACGTAAAGGTGCGATCGCCGT 1412 Query 36128 TTACCTAGACATCTGGCATAAGGATGTTATGGAATTCCTGCAAATTGGTACT-AATAACG 36186 ||| || ||| | | || || || | ||| ||||| | | || || || || | Sbjct 1413 TTATCTGGACGTTTTCCACAAAGACATCTTGGCCTTCCT-CGATCTGAAGCTGAACAATG 1471 Query 36187 GGGATGA---GAGACGTAAAGCACGTGACGTATTCCCAGGCTTATGTGTACCAGACCTTT 36243 | || || || ||| || | ||||||||||| ||| | || | || ||||| | Sbjct 1472 GTGACGAGCGGATGCGT---GCGCATGACGTATTCCACGGCATTTGCCTGCCTGACCTGT 1528 Query 36244 TCATGGAG 36251 |||||||| Sbjct 1529 TCATGGAG 1536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424051303535342