Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq837 150 2e-31 seq21 102 8e-17 seq608 98.7 9e-16 seq552 93.3 4e-14 >seq837 Length=16651 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 6708 TCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 6649 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||| ||| || || ||||| || || ||| |||| ||||||||||| ||||| || Sbjct 6648 CAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGG 6589 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||||||| |||||||||||| | ||||| ||| | ||||| ||| | Sbjct 6588 GATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGT-CGATCGAGTCCGACGGCTCCA 6530 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | ||| |||||||||||||| || || || ||||||||| Sbjct 6529 CGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 6480 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||| ||||| || || || ||||| || | | Sbjct 6479 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 6420 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| || || ||||| || || ||| |||| ||||||||||| ||||| || Sbjct 6419 AACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGG 6360 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| |||||||||||| | ||||| ||| | ||||| ||| || Sbjct 6359 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGT-CGATCGAGTCCGACGGCTCCAC 6301 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| |||||||||||||| || || || ||||||||| Sbjct 6300 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 6252 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||| ||||| || || || ||||| || | | Sbjct 6251 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 6192 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| || || ||||| || || ||| |||| ||||||||||| ||||| || Sbjct 6191 AACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGG 6132 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| |||||||||||| | ||||| ||| | ||||| ||| || Sbjct 6131 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTTGT-CGATCGAGTCCGACGGCTCCAC 6073 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| |||||||||||||| || || || |||||||| Sbjct 6072 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6025 >seq21 Length=112267 Score = 102 bits (112), Expect = 8e-17 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT- 47470 || |||||| ||| | ||| | |||||||||| || || || ||||| ||||| || Sbjct 22189 GGCATGAACTCGGGCCTCATGTGCCAGTACATCGAGTTCGTGGCTGACCGTCTGCT-GTA 22247 Query 47471 -TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 ||| || ||| ||||| |||||| | |||| || ||||| | ||| ||| | Sbjct 22248 CTCACTGGGTGTGTCC-AAGATCTACCACGTCAAGAACCCGTTCGACTGGATGGACATGA 22306 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | || ||| |||||||||||||||||||||||||||| || ||||| || Sbjct 22307 TCTCTCTCCAGGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 22355 >seq608 Length=23317 Score = 98.7 bits (108), Expect = 9e-16 Identities = 295/454 (65%), Gaps = 6/454 (1%) Strand=Plus/Minus Query 145758 GCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGA 145817 ||||| ||||||||||| |||||||| |||| ||| | ||| ||||| ||| || Sbjct 3873 GCGCATGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAAGCGTAGAAGTGCATG---GA 3817 Query 145818 CATGACCGAGTA---CGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAAT 145874 ||| | | ||| || ||||| | | | || || || || ||||| || Sbjct 3816 TGTGAGCTTGCTGATCGTCGGGTCGGCAATATGGATGTTGAGCGACTGACTCTGGCAGAT 3757 Query 145875 GAAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGT 145934 | ||| | |||||||| | || || | || |||| || || ||||| | || Sbjct 3756 GTAAGCGCCACGGTCGGCTGACAGATCCAGCACCGACTTCTGCTTGATCTCCCACACCGT 3697 Query 145935 TTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTC 145994 || | ||||| |||| | || || | | | ||||||||||||||| || Sbjct 3696 CTTGTACTTGTCCTTTACGTTGTCCGGGATGACCTTGACCTTCTGCACAGACCCACCGTC 3637 Query 145995 GGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGAT 146054 | || || | |||||| | || || || | ||| || || | || |||| || Sbjct 3636 GTTCAGGATCTGGTTGCGAACCTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCAT 3577 Query 146055 GAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCT 146114 || |||| ||| || | | ||||| || || || || || | |||| ||| Sbjct 3576 TAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGGCGGTTGTACATGTTCGA 3517 Query 146115 GGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCAT 146174 ||| | ||||||| ||||| ||||| || || |||||||| |||| ||| |||||||| Sbjct 3516 TGTGTAGGGCTCGATGGACTCATTGTTGCCCAGGATCTGCGCAGTCGAAGCCGTAGGCAT 3457 Query 146175 GTACGCCACCAGCAAAGAGTTTCTCACGCCGTGT 146208 | |||||||| | ||||| | | |||||| Sbjct 3456 GGGGGCCACCAGTAGCGAGTTACGGATACCGTGT 3423 >seq552 Length=27436 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || || ||||| || || ||||| || || ||| ||||| Sbjct 16600 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 16541 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || || |||||||||||| |||||||||||||| | || Sbjct 16540 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 16481 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || || || ||||| || || ||||| Sbjct 16480 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAAAG 16421 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 16420 ATCTGCATG 16412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475475158619360