Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq608 217 2e-51 seq21 140 4e-28 seq30 95.1 1e-14 seq5 93.3 5e-14 >seq608 Length=23317 Score = 217 bits (240), Expect = 2e-51 Identities = 1077/1689 (64%), Gaps = 68/1689 (4%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| ||||||||||| |||| |||||| || || | ||||| || | | ||| Sbjct 3867 GTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAAGCGTAGAAGTGCATGGATGTGAGCTT 3808 Query 115623 GGAGAGTGTTGG------ACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATG-A 115675 | || || || | | | ||| ||| | ||| ||| | |||| | Sbjct 3807 GCTGATCGTCGGGTCGGCAATATGGATGTTGAGCGACTGACTCTGGCA------GATGTA 3754 Query 115676 AGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTC 115735 |||| || || || || | || ||| | ||| |||| |||||| |||||||| || Sbjct 3753 AGCG-CCACGGTCGGCTGACAGATCCAGCACCGACTTCTGCTTGATCTCCCACACCGTCT 3695 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCT 115795 |||| || ||| | | || ||||| || || || || | ||| ||||| | | Sbjct 3694 TGTACTTGTCCTTTACGTTGTCCGGGATGACCTTGACCTTCTGCACAGACCCACCGTCGT 3635 Query 115796 TGACCATGAGATCCTTCATATCCTTTGAC---CAGAGACCAATCTTCTTGAGATCCTCCA 115852 | || || | || | ||| | | |||| || | || | || |||| || Sbjct 3634 T---CAGGATCTGGTTGCGAACCTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCA 3578 Query 115853 CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGG 115912 |||| ||| || || | |||||||| || || || | || ||||| | Sbjct 3577 TTAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGGCGGTTGTACATGTTCG 3518 Query 115913 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 115972 ||||| ||||| | | |||||||||| |||| ||| || || || || || || |||| Sbjct 3517 ATGTGTAGGGCTCGATGGACTCATTGTTGCCCAGGATCTGCGCAGTCGAAGCCGTAGGCA 3458 Query 115973 TGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGT 116032 |||| |||| || || ||| |||| ||| ||| | ||||| || || Sbjct 3457 TGGGGGCCACCAGTAGCGAGTTACGGATACCGTGTTTGATAACGTTCTCCTTCAGCGCAG 3398 Query 116033 CCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTT 116089 |||||| | | | | | | ||||||| || ||||||| |||||| | Sbjct 3397 CCCAGTTCCACAGGCCGGACGACGGGGAGACGCCCCACATGTCGAACTGGAAGATACCCT 3338 Query 116090 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC--GCCAAT-TCGG 116146 || ||||| |||| || ||||| || |||||| | |||| | |||| || Sbjct 3337 TACTAGCAGGCGAGCCCTGGAACGTCTCGTAAGGGCCC---AGCTCCTTGGCAATCTCCA 3281 Query 116147 AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGG 116206 | || ||| | | || | || || ||||| |||||| |||| | | Sbjct 3280 TGGACGTCTCCATTGACGCATAGTAGATGGTCTCGAAAATGTTCTTGTTCAGCTCGCGAG 3221 Query 116207 CCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCTTGGACA 116265 ||| ||| || |||||| | || | || || | || || ||||| || ||| Sbjct 3220 CCTGTTCGCTTTCGAACGCGT-AGTTCATGAGGATGAAAGCGTCGGCCAGACCCTGAACA 3162 Query 116266 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG---GGATAA 116322 || | || | ||||| || | ||| || ||||| ||||| ||||||| || ||| Sbjct 3161 CCAATACCCACAGGGCGGTGGCGCATGTTGGACTTGCGAGC---CTCCACGACTGGGTAA 3105 Query 116323 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 116382 | || | ||||| ||| | || ||||| ||| || ||||| || | || | ||| Sbjct 3104 TAGTTGATGTCGATCACCTTGTTGAGATTACGGGTCACCACCTTAGTCACGTCGTAGAGC 3045 Query 116383 TTTTCGTAATC-AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 116441 || | ||| | |||||| || || | || | ||||| || || | ||||| Sbjct 3044 TTCTGGTAGTTGAAAACTCCG-------TCCTCCACGAATTTAGGCAGTGCTACGGACGC 2992 Query 116442 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 116501 || || ||||| | ||||||| |||||||| || | || ||||| || Sbjct 2991 CAAGTTGCACACCGCCACCTCATCCGGCGACGTGTACTCCATCACCTCGCAGCACAAGTT 2932 Query 116502 --TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559 || | || |||||||| |||| || || ||||| ||| ||| |||||| Sbjct 2931 ACTGGAGCGG--ATCGTGCCCAAATTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTG 2874 Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCG 116619 || ||||| | ||| |||||||| | || | | | || | ||| | Sbjct 2873 TACAGCATGAAGGGCACACCCGTCTCAATCTGCGCGTCCAAGATCGAGAACCACA----- 2819 Query 116620 GCGGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 116674 || |||| ||| | | | ||| || || ||||||| ||||||||| |||||| | Sbjct 2818 GCTGCTGTGCATTGATCGTCTTGCGCGCACGTCCCTCCTTCTCGTACTTCTCGTAGAGAG 2759 Query 116675 CCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGA 116733 |||||||| || ||| |||| ||| |||| || || || | || |||||||| | | Sbjct 2758 TTTCAAACTCGTCTCCC-CAGCACTCGTAGAGGCCAGGAGCTTCATTGGGACAGAACAAA 2700 Query 116734 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAG 116793 ||| | ||| | || || || |||||||| || || |||| ||| || || || Sbjct 2699 CTCCACTTGCCATTGGCTTCCACGCGTTTCATGAACAGATCAGGGACCCACAGAGCGTAG 2640 Query 116794 AAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 116852 || | || ||| || | || || | | || || || ||| | ||||| || || Sbjct 2639 AACAAGTCACGAGCACGGTGCAACT-CGTTGCCGTGGTTCTTACGTAGGTCCAAGAACTC 2581 Query 116853 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGA---CGACC 116909 | || || || |||||||| |||| ||| | |||| || || || || | || Sbjct 2580 GAAGACGTCAGCATGCCACGGCTCCAAGTAGATAGCGAACGATCCTTTACGTTTGCCTCC 2521 Query 116910 AGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATC 116969 |||||| || |||| ||||| ||||||| || || |||||||| ||||| |||| Sbjct 2520 GCCCTGGTCCACGTACCGAGCCGTGTCGTTAAACACCCGCAGCATTGGGATGATGCCATT 2461 Query 116970 AGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCAT 117029 || ||| || || || || || | || |||||| || | ||| || || Sbjct 2460 GGACGAGCCGTTCGTGCCTCGGATGTAACTGTTAGTGGCTCGGATGTTGTGCATACTGAT 2401 Query 117030 ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCC 117089 ||||||||||| ||||| || ||||| || |||| | | ||| || ||||||| || Sbjct 2400 GCCAATACCCCCAGCCCATTTGGAGATGCACGCACACTGCTTCAGAGTGTCGTAGATGCC 2341 Query 117090 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 117149 || || ||||| ||| | || | | |||||| |||| || || | || || Sbjct 2340 CTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGAGGACAGCTGAGGACGCGGAGT 2281 Query 117150 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGT 117208 |||||||||||||| || || || || || |||| | || | || |||||| |||| Sbjct 2280 GCCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAAGA-ACTTCTGCGACATCAACTCGT 2222 Query 117209 AGGTCTCCA 117217 | ||||||| Sbjct 2221 ACGTCTCCA 2213 >seq21 Length=112267 Score = 140 bits (154), Expect = 4e-28 Identities = 304/448 (68%), Gaps = 14/448 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || || ||||||||||| ||||| ||||| || | ||| ||| | ||||| Sbjct 22356 GTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCAT 22297 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTGTTTGAGGAGAC 127349 | || || |||||||| || | || | | ||| |||| | || || |||| Sbjct 22296 CCAGTCGAACGGGTTCTTGACGTGGTAGATCTTGGACACACCCAGTGAGTAC-AGCAGAC 22238 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT-A 127408 | || | ||| |||| ||||||| |||| | |||||||| ||||| || | | Sbjct 22237 GGTCAGCCACGAACTCGATGTACTGGCACATGAGGCCCGAGTTCATGCCGATCAGCTCCA 22178 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || ||||||| ||| | | ||| | | |||||| |||| || || || ||||| | Sbjct 22177 CA-GGGAGCGAGTCACACACAAACTCGTGCTCAATCACCACCGCGTCACGCACGATCTCA 22119 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG-----CAA 127523 || | | | | || || | ||| | |||| |||| | || | | Sbjct 22118 TGCACACGGCTCTCCGGCAGTTTGTTGACCAG---CTTG--GAGTACATGAGGCAGGCGA 22064 Query 127524 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 127583 | || ||| | ||||| |||||| ||| || || |||||||||| ||||| |||| Sbjct 22063 AGTCCGTGTGCATGCCCTCATCACGGCTGATCAGCTCGTTCGAGAAGCTGAGACCAGGCA 22004 Query 127584 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 127643 |||| || |||||||| | |||||| || | || || ||||| ||||||||||| |||| Sbjct 22003 TGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCCT 21944 Query 127644 CCACACACGCGAACGCAAATAGACGCTC 127671 |||| | |||||||| | |||||||| Sbjct 21943 CCACCGAGGCGAACGCCAGCAGACGCTC 21916 >seq30 Length=241204 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 176783 AGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCG 176842 ||||||||||| || || ||||| ||||| || || |||||||| || || ||| Sbjct 58151 AGTTGCGCCACAGATGCATCGCGCACATTGAGGAGTTTACCACGGAGAGGAAAAACGCCG 58092 Query 176843 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 176902 || || ||||| ||||| || | |||||||| || || || | ||| || |||||||| Sbjct 58091 TACTGGTCACGCCCAACAACTGCAAGACCAGCCACAGCCAGTGCCTTGGCTGAATCACCT 58032 Query 176903 TCCGTCACGATGAGCGTACA 176922 || |||| ||| |||| ||| Sbjct 58031 TCAGTCAAGATAAGCGAACA 58012 >seq5 Length=164056 Score = 93.3 bits (102), Expect = 5e-14 Identities = 274/417 (66%), Gaps = 13/417 (3%) Strand=Plus/Plus Query 12652 CCAAAATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGC 12711 ||| ||||| || ||| ||| ||| |||||| ||| || | | || ||||| | Sbjct 64435 CCAGAATCTCCTTGCGGCCGGCCACGTCGGGTAGATCCACCGTCACGTGGCGGTCAAATC 64494 Query 12712 GACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAA 12771 |||| || |||| | || | || || | || | ||| || ||| ||||||||| Sbjct 64495 GACCCGGTCGGATCAACGCATTATCCAGCACGTCGGGGAAGTTGGTGGCCCCGATGACAA 64554 Query 12772 CGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTT 12831 ||||||| | | | |||||| || |||||||| | ||||| |||| || Sbjct 64555 TGATGCCCTTGTTCTGATCGAAACCGTCCATCTCCACGAGCAGTTGGTTGAGCGT----- 64609 Query 12832 CACGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTT 12891 || ||||| || | | || || |||| | ||||| ||||| || | Sbjct 64610 CATCTTCATGGCCTGCTG---TTCCTTGAGCT-TGCGCGTCCCACCGATAGCGTCGATCT 64665 Query 12892 CGTCAATGAAAACGATACACGGTTGATTTTCAC--GGGCAACTTCAAAGATATCTCGCAC 12949 |||||||||| | ||| ||||| || || | | || | || ||||| | || ||||| Sbjct 64666 CGTCAATGAAGATGATGCACGG-TGCCTTCCGCTTGGCCGAC-TCAAACAGGTCGCGCAC 64723 Query 12950 TCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAA 13009 || || || || ||||| |||||||| |||| | || |||| | | || ||| Sbjct 64724 TCGACGCGCGCCCACGCCCACGTACATCTCCTCAAACTCGGATCCGGACGAATAGAAGAA 64783 Query 13010 GGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || ||| || ||||| ||||| || ||||| || || ||||| ||||| || || Sbjct 64784 CGGCACGCCGGCCTCACCAGCGATTGCGCGGGCCAGCAGCGTCTTGCCCGTGCCCGG 64840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613474116624240