Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq21 149 1e-30 seq608 136 6e-27 >seq21 Length=112267 Score = 149 bits (164), Expect = 1e-30 Identities = 417/636 (66%), Gaps = 33/636 (5%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 |||| |||||||||||||||||||||||||| | || || ||||| | |||| Sbjct 22347 CACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATCCAGTCGAA 22288 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 |||||||| ||||| ||| ||| | | || || | ||||| | ||| ||||| Sbjct 22287 CGGGTTCTTGACGTGGTAGATCTTGGACACACCCAGTGAGTACAGCAGACGGTCAGCCAC 22228 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 || |||||||| ||||| | | |||| || || | |||| || ||||||| Sbjct 22227 GAACTCGATGTACTGGCACATGAGGCCCGAGTTCATGCCGATCAGCTCCACAGGGAGCGA 22168 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTC 159882 || ||| |||||| | ||||||| | ||||| || ||| |||| ||||| Sbjct 22167 GTCACACACAAACTCGTGCTCAATCACCACCGCGTCACGCACGATCTCATGCACACG--- 22111 Query 159883 GTACCCCGGC------TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCA 159936 | | ||||| ||| ||| || || ||| |||||| || ||||| Sbjct 22110 GCTCTCCGGCAGTTTGTTGACCAGCTTGGAGT------ACATGAGGCAGGCGAAGTCCGT 22057 Query 159937 GTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCC 159996 ||||| ||||| || || ||| | |||||| || | | |||| || ||||||| || Sbjct 22056 GTGCATGCCCTCATCACGGCTGATCAGCTCGTTCGAGAAGCTGAGACCAGGCATGAGGCC 21997 Query 159997 ACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGG 160055 ||| |||||||| || |||| ||| ||| | | | | || ||||| |||||||| | Sbjct 21996 GCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCACCG 21938 Query 160056 CCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCA----TGGGTC-CACCT 160110 || ||||||| || | ||| || || | || |||||| |||| Sbjct 21937 AGGCGAACGCCAGCAGACGCTC--------CGGGTATGACGACACACGTGGGTCGCACCA 21886 Query 160111 TTTG---GCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAA 160167 ||| ||||| | || ||||| | | |||||| ||| ||| | ||| | ||| Sbjct 21885 CTTGAGTGCCCAGTTGGCTTTCTTCGTCACGCACGGGATGGTCTCAATGGCACGCAGCAA 21826 Query 160168 TCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGC 160227 ||||| ||| | | |||||||| || |||| ||| |||||| | || | Sbjct 21825 GTGGTCCTTCTCAATGGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTAGACCTCCGA 21766 Query 160228 GTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAA 160263 ||| | || |||||||| ||||| ||| |||||| Sbjct 21765 GTGGATGTTCTCGATGGCAATCTGGAAGCCGTAGAA 21730 >seq608 Length=23317 Score = 136 bits (150), Expect = 6e-27 Identities = 409/619 (66%), Gaps = 17/619 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACAT 203895 ||||||||| ||||| || || |||| |||| || | | | || |||||||| Sbjct 3915 CTTGTCCACGGTGAATTGGATAGCGT---CGGCTTTCGGGCGCCCGCGCATGTAGTACAT 3859 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || ||||||| ||| |||| | ||||||||| | || ||||| | | Sbjct 3858 GCCCGTCTTGAGTCCCTTCTTCCAAGCGTAGAAGTGCATGGATGTGAGCTTGCTGATCGT 3799 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| || || ||||| || ||||| || ||| |||| ||| |||| || || | Sbjct 3798 CGGGTCGGCAATATGGATGTTGAGCGACTGACTCTGGCAGATGTAAG-CGCCACGGTCGG 3740 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGT-CTCTG 204073 | | || || | | | ||||||| |||||||||||||||||| || || || | Sbjct 3739 CTGACAGATCCAGCACCGACTTCTGCTTGATCTCCCACACCGTCTTGTACTTGTCCTTTA 3680 Query 204074 GTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CA 204131 ||| || | ||| || | ||| | || || |||| || | ||| Sbjct 3679 CGTTGTCCGGGATGACCTT--GACCTTCTGCACAGACCCACCGTCGTTCAGGA-TCTGGT 3623 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 | | ||| | ||| ||||||| | |||||||||| || |||| ||| | Sbjct 3622 TGCGAACCTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATTAGGTACTTGTTCA 3563 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 |||| || || || | ||||| | ||| || ||| ||| ||| | || |||| Sbjct 3562 CGATCGTGAACTCACCAGCAAGCACACGGCGGTTGTACATGTTCGATGTGTAGGGCTCGA 3503 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | ||| |||||||| | ||||| || || ||||| |||||||| |||| || | Sbjct 3502 TGGACTCATTGTTGCCCAGGATCTGCGCAGTCGAAGCCGTAGGCATGGGGGCCACCAGTA 3443 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA--T 204369 | ||||| || | ||||| ||| || | |||||| | | ||||| || Sbjct 3442 GCGAGTTACGGATACCGTGTTTGATAACGTTCTCCTTCAGCGCAGCCCAGTTCCACAGGC 3383 Query 204370 CGCAC-TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 || || || |||||||||||||||||||| ||||| || | ||| | || || Sbjct 3382 CGGACGACGGGGAGACGCCCCACATGTCGAACTGGAAGATACCCTTACTAGCAGGCGAGC 3323 Query 204429 CCTTGTACGTCGGATAAGG 204447 ||| | ||||| ||||| Sbjct 3322 CCTGGAACGTCTCGTAAGG 3304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795112321255840