Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq552 161 1e-34 seq322 147 2e-30 seq837 145 9e-30 seq422 104 3e-17 >seq552 Length=27436 Score = 161 bits (178), Expect = 1e-34 Identities = 152/191 (80%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| | Sbjct 16602 CCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 16543 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | ||| | | |||||||||| ||| |||| ||||| | | | Sbjct 16542 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 16484 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | ||||| || ||||| |||| ||||||||| || |||||||| || || ||| Sbjct 16483 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACA 16424 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 16423 AAGATCTGCAT 16413 >seq322 Length=35284 Score = 147 bits (162), Expect = 2e-30 Identities = 175/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| || || || | | ||||| ||||||||||| || |||||| ||||| ||||| Sbjct 19849 TTAGTTTCCGCCGCGAAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTA 19908 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||| |||||||| |||| || ||||||||||| ||||| |||| ||| |||||||| Sbjct 19909 GTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTC 19968 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 | ||| | || ||||| || ||||||| ||| | ||| | | | || ||| || Sbjct 19969 AGGCGGGATGCCTTCCTTATCTTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACG 20027 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || | |||||| || |||||||||| ||| || || ||||| ||||| Sbjct 20028 GCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20082 Score = 140 bits (154), Expect = 4e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| ||||||||| |||||||| || Sbjct 20096 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCG 20155 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| ||| |||||||| | ||| | || ||||| Sbjct 20156 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTA 20215 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || ||||||| ||| | ||| | | | || ||| || ||||| || | |||||| Sbjct 20216 TCTTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGAT 20274 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||||| ||| || || ||||| ||||| Sbjct 20275 CGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20310 Score = 140 bits (154), Expect = 4e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| ||||||||| |||||||| || Sbjct 20324 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCG 20383 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| ||| |||||||| | ||| | || ||||| Sbjct 20384 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTA 20443 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || ||||||| ||| | ||| | | | || ||| || ||||| || | |||||| Sbjct 20444 TCTTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGAT 20502 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || |||||||||| ||| || || ||||| ||||| || Sbjct 20503 CGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATCTT 20541 >seq837 Length=16651 Score = 145 bits (160), Expect = 9e-30 Identities = 174/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| |||| || |||||| ||||| |||||||| Sbjct 6253 TGCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAC 6194 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || |||| || ||||||||||||||||| || || ||||||||||||| || Sbjct 6193 TCAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCG 6134 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || ||||||||| ||| |||| ||| | ||| | | | || ||| || ||| Sbjct 6133 GGATGCCTTCCTTGTCCTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCC 6075 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || |||| |||||| || ||||| ||||| || || || ||||| ||||| ||| Sbjct 6074 ACGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATCTTG 6021 Score = 141 bits (156), Expect = 1e-28 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| |||| || |||||| ||||| |||||||| Sbjct 6481 TGCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAC 6422 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || |||| || ||||||||||||||||| || || ||||||||||||| || Sbjct 6421 TCAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCG 6362 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || ||||||||| ||| |||| ||| | ||| | | | || ||| || ||| Sbjct 6361 GGATGCCTTCCTTGTCCTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCC 6303 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||| || ||||| ||||| || || || ||||| ||||| Sbjct 6302 ACGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6253 Score = 141 bits (156), Expect = 1e-28 Identities = 174/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| || || || | | ||||| |||||| |||| || |||||| ||||| ||||| Sbjct 6714 TTAGTTTCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTA 6655 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| | || || |||| || ||||||||||||||||| || || ||||||||||| Sbjct 6654 GTCACTCAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTC 6595 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 || ||| | || ||||||||| ||| |||| ||| | ||| | | | || ||| || Sbjct 6594 GGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACG 6536 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| |||||| || ||||| ||||| || || || ||||| ||||| Sbjct 6535 GCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6481 >seq422 Length=29202 Score = 104 bits (114), Expect = 3e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| |||| || |||||| ||||| |||||||| || |||||||| | Sbjct 14217 ACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCC 14276 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || ||||||||||||||||| |||| ||||||||||| Sbjct 14277 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 14318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565207919519280