Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq21 257 2e-63 seq322 129 6e-25 seq837 123 2e-23 seq552 122 9e-23 seq422 100 3e-16 >seq21 Length=112267 Score = 257 bits (284), Expect = 2e-63 Identities = 534/785 (68%), Gaps = 24/785 (3%) Strand=Plus/Minus Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 ||||| | ||| ||||||||||||||||| || ||||| | | || | || | | Sbjct 22244 AGCAGACGGTCAGCCACGAACTCGATGTACTGGCACATGAGGCCCGAGTTCATGCCGATC 22185 Query 132781 AGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACG 132840 || ||| || |||| || | ||| ||||| || | |||||||| ||| Sbjct 22184 AGCTCCACAGGGAGCGAGTCACACACAAACTCGTGCTCAATCACCACCGCGTCACGCACG 22125 Query 132841 ATTTCCCTAACGCGCGCCGCGCTC-GGCCGTTGC---ACCAAATGCTTGAA---CATCAA 132893 || || | || | | || ||| ||| ||| |||| ||||| | ||| | Sbjct 22124 ATCTC----ATGCACACGGCTCTCCGGCAGTTTGTTGACCA---GCTTGGAGTACATGAG 22072 Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| || ||||| |||| |||||| || | | || || ||||| ||| | | Sbjct 22071 GCAGGCGAAGTCCGTGTGCATGCCCTCATCACGGCTGATCAGCTCGTTCGAGAAGCTGAG 22012 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || |||||||||||||| || |||||||| || |||| | ||| |||||| ||||| Sbjct 22011 ACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAA 21952 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG- 133072 || |||||| || | ||||| |||| ||| ||||| | | || | | ||| Sbjct 21951 GATGCCCTCCACCGAGGCGAACGCCAGCAGACGCTCCGGGTA--TGACGACACACGTGGG 21894 Query 133073 -CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG--ACGCACGGCATCGTTTCGATGG 133129 || ||| || ||||| | ||| |||||| | |||||||| || || || |||| Sbjct 21893 TCGCACCACTTGAGTGCCCAGTTGGC--TTTCTTCGTCACGCACGGGATGGTCTCAATGG 21836 Query 133130 CGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAAT 133189 | || ||| || ||||| | | | ||| ||||| ||||| ||| | Sbjct 21835 CACGCAGCAAGTGGTCCTTCTCAATGGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGT 21776 Query 133190 ACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGA 133249 | | |||||||| | |||||| ||||| || || |||||||| ||||| || |||||| Sbjct 21775 AGACCTCCGAGTGGATGTTCTCGATGGCAATCTGGAAGCCGTAGAAGCAGCGAGCCTCGG 21716 Query 133250 CCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGG 133309 |||||||||||| | ||| | | |||| || ||||| |||||||| || |||| Sbjct 21715 GCACCTGCACTTCGTTGCTGAAGTTCATGGCCAGGTTCTCGTTTACGATGCCATCACTGG 21656 Query 133310 CGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCC 133369 | ||||||||||| ||||| ||||||| ||| || ||||||||||| | | | ||| Sbjct 21655 CCGCGAAAAAGGCGAGCACATGCTTGACGAAGTGACGCTCGTTGTCCGAGAGGTTCGCCC 21596 Query 133370 AGTCGCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCT 133428 |||| | | | | || | |||||||| ||||||| | ||||||||||| |||||||| Sbjct 21595 AGTC-CTTGAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAAAACGAAGCCTCGGCC 21537 Query 133429 TTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGG 133488 || |||||||| ||||| ||| | || ||||| || | ||| || ||| ||| Sbjct 21536 TTCTTGTACATCTGCCACACGTCGTGCTCCTGAATGGGGAAGAGCACGAAGCGGTTCGGG 21477 Query 133489 TTTTC 133493 || || Sbjct 21476 TTCTC 21472 >seq322 Length=35284 Score = 129 bits (142), Expect = 6e-25 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | |||||||| || ||||| | ||||| ||| | | Sbjct 20082 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCG 20023 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | || || | || || || || || |||||| |||| Sbjct 20022 GACTCGATCGACAACG-TGAAGCAGAAGATTCAAGATAAGGAAGGCAT-CCCGCCTGACC 19965 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || || | ||| ||||| |||||||| |||| ||||| || | |||||||| Sbjct 19964 AGCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACA 19905 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| ||||||||||| ||||||||||| | | ||||| Sbjct 19904 ACATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGCGTCTTCGCGGCGG 19856 Score = 127 bits (140), Expect = 2e-24 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || ||| | |||||||| || ||||| | ||||| ||| | Sbjct 20541 AAGATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCG 20482 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-G 38358 | ||| | | |||| | || | || || | || || || || || |||||| | Sbjct 20481 TCGGACTCGATCGACAACG-TGAAGCAGAAGATTCAAGATAAGGAAGGCAT-CCCGCCTG 20424 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| || || || || | ||| ||||| |||||||| |||| ||||| || | ||||| Sbjct 20423 ACCAGCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACT 20364 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| |||||||||| |||||||||| || | |||||| Sbjct 20363 ACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGC 20311 Score = 125 bits (138), Expect = 7e-24 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | |||||||| || ||||| | ||||| ||| | | Sbjct 20310 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCG 20251 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | || || | || || || || || |||||| |||| Sbjct 20250 GACTCGATCGACAACG-TGAAGCAGAAGATTCAAGATAAGGAAGGCAT-CCCGCCTGACC 20193 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || || | ||| ||||| |||||||| |||| ||||| || | |||||||| Sbjct 20192 AGCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACA 20133 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| |||||||||| |||||||||| || | |||||| Sbjct 20132 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGC 20083 >seq837 Length=16651 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || || ||||| || ||||| | ||||| ||| | Sbjct 6022 AAGATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 6081 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||| | | |||| | || | ||||||| ||||| || || || || |||| Sbjct 6082 TCGGACTCGATCGACAACG-TGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGA 6140 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| | || | ||| ||||| |||||||| |||| || || | | ||||| Sbjct 6141 CCAGCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTA 6200 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| |||||||||| ||||||||||| || | || ||| Sbjct 6201 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 6252 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || ||||| | ||||| ||| | | Sbjct 6253 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 6312 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | ||||||| ||||| || || || || ||||||| Sbjct 6313 GACTCGATCGACAACG-TGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCA 6371 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| ||||| |||||||| |||| || || | | |||||||| Sbjct 6372 GCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAA 6431 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||||||||| ||||||||||| || | || ||| Sbjct 6432 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 6480 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || ||||| | ||||| ||| | | Sbjct 6481 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 6540 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | ||||||| ||||| || || || || ||||||| Sbjct 6541 GACTCGATCGACAACG-TGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCA 6599 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| ||||| |||||||| |||| || || | | |||||||| Sbjct 6600 GCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAA 6659 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||||||||| ||||||||||| || | || || Sbjct 6660 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGG 6707 >seq552 Length=27436 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || ||||| || |||||||| | ||||| ||| | || Sbjct 16413 ATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCATCACGCTGGACGTGGAGCCGTCC 16472 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||||| | | | | || | ||||||| ||||| |||||||| |||||| ||||| Sbjct 16473 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAAT-CCCGCCTGACCA 16531 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| |||||||| |||||||| Sbjct 16532 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCGGACTACAA 16591 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 16592 CATCCAGAAGG 16602 >seq422 Length=29202 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 14330 GGAATCCCCCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 14271 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || || |||||||||||||| ||||| |||| ||||| ||||||||||| || | Sbjct 14270 ACTCTGTCGGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGTCTGCGT 14211 Query 38466 GGCGG 38470 || || Sbjct 14210 GGTGG 14206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500145828181760