Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq608 219 5e-52 seq21 122 1e-22 seq52 95.1 1e-14 seq2619 86.0 7e-12 seq173 86.0 7e-12 >seq608 Length=23317 Score = 219 bits (242), Expect = 5e-52 Identities = 681/1037 (66%), Gaps = 33/1037 (3%) Strand=Plus/Minus Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339 || || ||||| |||||||| | ||| | ||| | ||| ||||| || ||||| || || Sbjct 3179 TCGGCCAGACCCTGAACACCAATACCCACAGGGCGGTGGCGCATGTTGGACTTGCGAGCC 3120 Query 106340 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 106399 | | || || ||| | || |||| || || ||| ||||| ||| || | ||| Sbjct 3119 TCCACGACTGGGTAATAGTTGATGTCGATCACCTTGTTGAGATTACGGGTCACCACCTTA 3060 Query 106400 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 106459 || | || | || || | || | ||| | || | || | || | || || Sbjct 3059 GTCACGTCGTAGAGCTTCTGGTAGTTGAAA-----ACTC-CGTCCTCCACGAATTTAGGC 3006 Query 106460 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519 || || | || ||||| ||||| || ||| ||||||| |||||||| | | Sbjct 3005 AGTGCTACGGACGCCAAGTTGCACACCGCCACCTCATCCGGCGACGTGTACTCCATCACC 2946 Query 106520 TCTGTACACAAGTT---GGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || |||||||| ||| | ||||| |||||||||| ||||| ||| | Sbjct 2945 TCGCAGCACAAGTTACTGGAGCGG---ATCGTGCCCAAATTCTGCTGGTTGGACTTGCGG 2889 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||| ||| |||||||| |||||| ||||| |||||||| |||| | | | || Sbjct 2888 TTGGCCGCGTCCTTGTACAGCATGAAGGGCACACCCGTCTCAATCTGCGCGTCCAAGATC 2829 Query 106637 GCCTTCCACACATCGGCGGCTGGTACAATGG-CGT--TG---GCCCGTCCCTCCGCCTCG 106690 | ||||| || |||| | || || ||| || || ||||||||| |||| Sbjct 2828 GAGAACCACA-----GCTGCTG-TGCATTGATCGTCTTGCGCGCACGTCCCTCCTTCTCG 2775 Query 106691 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTT 106749 ||||| |||||| | ||||||||| || ||| | || ||| |||| || || || | Sbjct 2774 TACTTCTCGTAGAGAGTTTCAAACTCGTCTCCC-CAGCACTCGTAGAGGCCAGGAGCTTC 2716 Query 106750 GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809 | |||||||| | | ||| | ||| | || || || |||||||| || || || Sbjct 2715 ATTGGGACAGAACAAACTCCACTTGCCATTGGCTTCCACGCGTTTCATGAACAGATCAGG 2656 Query 106810 AATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTC 106868 | |||||| | | || | || | | ||| | || || ||| || ||||| | Sbjct 2655 GACCCACAGAGCGTAGAACAAGTCACGAGCACGGTGCAACT-CGTTGCCGTGGTTCTTAC 2597 Query 106869 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 106928 ||| || | |||||| | || || || ||||| ||||| | |||| |||| |||| Sbjct 2596 GTAGGTCCAAGAACTCGAAGACGTCAGCATGCCACGGCTCCAAGTAGATAGCGAACGATC 2537 Query 106929 CCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985 | || || ||| | | || | || || || || ||| ||||||| || || |||| Sbjct 2536 CTTTACGTTTGCCTCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTAAACACCCGCAGCA 2477 Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 107045 |||| || || |||| || || || || || || || | ||| |||||| | Sbjct 2476 TTGGGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAACTGTTAGTGGCTCGGA 2417 Query 107046 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 107105 | || || || ||||||||||||||||| || ||||| |||||||| | | | Sbjct 2416 TGTTGTGCATACTGATGCCAATACCCCCAGCCCATTTGGAGATGCACGCACACTGCTTCA 2357 Query 107106 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 107165 |||| | ||||| || | || ||||| |||| |||| | | |||||| ||||| Sbjct 2356 GAGTGTCGTAGATGCCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGAGGACA 2297 Query 107166 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT- 107224 ||| || | || || ||||| |||||||| || || || || || |||| | || | Sbjct 2296 GCTGAGGACGCGGAGTGCCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAAGA-ACTTC 2238 Query 107225 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATG 107284 || |||||| ||||| ||||||| | | | |||| | ||||||||| | Sbjct 2237 TGCGACATCAACTCGTACGTCTCCAGAGCTGCCTGGATGTTGCTCTTGTGGATGCCCAGA 2178 Query 107285 GCCACACGCATAAACAT 107301 ||||| ||||||| ||| Sbjct 2177 GCCACGCGCATAATCAT 2161 >seq21 Length=112267 Score = 122 bits (134), Expect = 1e-22 Identities = 333/501 (66%), Gaps = 12/501 (2%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| || ||||||||||| || | || || | ||||| Sbjct 22355 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATC 22296 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 |||| || || ||||| ||| | || | ||| || | | | || ||||| Sbjct 22295 CAGTCGAACGGGTTCTTGACGTGGTAGATCTTGGACACACCCAGTGAGTACAGCAGACGG 22236 Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-ACA 117164 || | ||| |||| ||||||| | |||| | |||||||| ||||| || | ||| Sbjct 22235 TCAGCCACGAACTCGATGTACTGGCACATGAGGCCCGAGTTCATGCCGATCAGCTCCACA 22176 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||||| | ||| | | ||| | | ||||||| | ||||| || |||||| | || Sbjct 22175 -GGGAGCGAGTCACACACAAACTCGTGCTCAATCACCACCGCGTCACGCACGATCTCATG 22117 Query 117225 GATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 117280 | | | ||| ||| || | | || | | | ||| || ||| || | Sbjct 22116 CACACGGCTCTCCGGCAGTTTGTTGACCA-GCTTGGAGTACATGAGG--CA-GGCGAAGT 22061 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 || ||| | |||||||| ||| || || || || ||||||| || || ||||||| Sbjct 22060 CCGTGTGCATGCCCTCATCACGGCTGATCAGCTCGTTCGAGAAGCTGAGACCAGGCATGA 22001 Query 117341 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 117400 | || |||||||| | ||| | || | |||||| || || ||||||||||| ||||||| Sbjct 22000 GGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCA 21941 Query 117401 CACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAAACCATTTC 117459 | | || ||||| | || ||||| | | | || ||| || || ||| |||| || Sbjct 21940 CCGAGGCGAACGCCAGCAGACGCTCCGGGTATGA-CGACACACGTGGGTCGCACCACTTG 21882 Query 117460 ATTGCCCATTTCGCCTTCTTC 117480 | |||||| || || |||||| Sbjct 21881 AGTGCCCAGTTGGCTTTCTTC 21861 >seq52 Length=88784 Score = 95.1 bits (104), Expect = 1e-14 Identities = 270/409 (66%), Gaps = 11/409 (3%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 || || ||||| ||||| || | || | ||||| |||||| | || ||||| | || Sbjct 40836 TCGAATCGACCAGGACGCAGAATGGCCTTGTCAAGAATATCAGCACGGTTCGTGCCTGCA 40777 Query 9255 ATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | || || | |||| ||| | | |||||||||||||| || ||||||||| Sbjct 40776 AGCACCACCACACCT---TCACTCGAGTTGAAACCATCCATCTCGACCAGCAGTTGGTTA 40720 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACT-GCGT--TGCTTTC-C 9367 | || | ||| || || || || || | | | | || || || | ||| | | Sbjct 40719 AGCGTGTTTTCACGCTCGTCGTT-GCCGCCCGAGAAGTTGCCCTTGCTTCGTGCACGCGC 40661 Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 ||| |||||||| ||||||||||| ||||| ||||| || | ||||| | || Sbjct 40660 CACAGCATCAATTTCATCAATGAACACAATGCATGGAGCGTTCGCACGGGCCTCCTTGAA 40601 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 || || || || | | | |||||||| || |||||||| | || | | | || Sbjct 40600 CAGGTCACGCACACGTGACGGACCCACACCGACGAACATCTCGATGAAATCCGAACCAGA 40541 Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 | || ||| || || ||| |||||| ||| |||| || || || |||||||| Sbjct 40540 AATGCTGAAGAACGGCACGCTAGCTTCACCAGCAGTGGCCTTCGCCAGCAGCGTCTTACC 40481 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596 |||||| ||| || | || || |||||| || |||||||| ||| Sbjct 40480 CGTACCGGGCGGGCCAACAAGCAGCGCACCCTTGGGGATCTTGGCACCA 40432 >seq2619 Length=2888 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 2331 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 2390 Query 136224 CAGGTAGGAGCT 136235 | |||||||||| Sbjct 2391 CCGGTAGGAGCT 2402 >seq173 Length=52550 Score = 86.0 bits (94), Expect = 7e-12 Identities = 237/355 (67%), Gaps = 10/355 (3%) Strand=Plus/Plus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 ||||| |||||||| || | || || ||||| ||||| || | | || ||||| | Sbjct 32879 CCCGTTCCGATACCGTCACTGCCGTTGACGAGCACCATGGGGAAAATCGGAATGTACCAC 32938 Query 168351 TCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 168410 ||||| || || || | || || |||||||| || ||||| | | ||| ||||| Sbjct 32939 TCTGGCTCGATCGACTGGCCGTCTTCATCCAAATACTTGAGCACATCATTGTCCAGAGGA 32998 Query 168411 TCAAAGATCTTGCGA-GCCTCT-TTGGT--AAGTTTTGTGAAAATGTACCTCGT-CTGAG 168465 || |||| ||| || | ||| | ||||| ||||||||||| | | ||| | Sbjct 32999 TCGTAGATT---CGACGCGTGAGTTGCTCCAAGTTG-GTGAAAATGTAACGAGCACTG-G 33053 Query 168466 AAGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAA 168525 |||||||| || ||||| | ||||||||| || ||||| || ||||||| | Sbjct 33054 CCGCATCCTTGCCGCCCATCAAACGCGTACCGAACTGACCGATAGGCGATAGAAGGTGGA 33113 Query 168526 TGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTT 168585 ||||||| || | || | ||||| || || || | || ||| | || Sbjct 33114 TGTTGTTGCTTCCGACAAAATCCTGTGCCATATTCACGATACAGCCCTGCAAGCTTTGTT 33173 Query 168586 CACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTT 168640 | || |||||||| ||||| | || | || || | ||||| ||||||||||| Sbjct 33174 CGCCGTGGTGGTATGCAGAATGCTCGGACACGTAACCAGCCAGCTGTGCCACCTT 33228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589948985285360