Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq552 111 1e-19 seq837 93.3 3e-14 seq322 91.5 1e-13 >seq552 Length=27436 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 11/198 (6%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| |||||||| ||| | || | || || ||||| || ||||| || || Sbjct 16600 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 16541 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC-----GG 34908 || || |||||||| |||| | ||||||||||| || ||||| ||||| Sbjct 16540 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 16481 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 ||||| ||| || | ||| || || | || ||||| |||||||| || ||||||| Sbjct 16480 ATGCTGTCG---GAC--GGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCA 16426 Query 34969 CAAAGATCTGCAT-ATTC 34985 ||||||||||||| |||| Sbjct 16425 CAAAGATCTGCATGATTC 16408 >seq837 Length=16651 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| ||||| ||||| | || | | || | || |||||||| || ||||| || Sbjct 6215 TCCTTCTGGATGTTGTAGTCACTCAACG-TACGACCGTCCTCCAGCTGCTTGCCGGCGAA 6157 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 |||| ||| |||||||| |||| | || |||||||| || ||||| || ||| Sbjct 6156 GATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTT 6097 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | ||||| || | ||| || || | || || || || || || ||||||||||| Sbjct 6096 GTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCAC 6037 Query 34970 AAAGATCTGCATATT 34984 ||||||||||| || Sbjct 6036 GAAGATCTGCATCTT 6022 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| ||||| ||||| | || | | || | || |||||||| || ||||| || Sbjct 6443 TCCTTCTGGATGTTGTAGTCACTCAACG-TACGACCGTCCTCCAGCTGCTTGCCGGCGAA 6385 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 |||| ||| |||||||| |||| | || |||||||| || ||||| || ||| Sbjct 6384 GATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTT 6325 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | ||||| || | ||| || || | || || || || || || ||||||||||| Sbjct 6324 GTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCAC 6265 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 6264 GAAGATCTGCAT 6253 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| ||||| ||||| | || | | || | || |||||||| || ||||| || Sbjct 6671 TCCTTCTGGATGTTGTAGTCACTCAACG-TACGACCGTCCTCCAGCTGCTTGCCGGCGAA 6613 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 |||| ||| |||||||| |||| | || |||||||| || ||||| || ||| Sbjct 6612 GATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTCACGTT 6553 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | ||||| || | ||| || || | || || || || || || ||||||||||| Sbjct 6552 GTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCAC 6493 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 6492 GAAGATCTGCAT 6481 >seq322 Length=35284 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || |||||||| || || || || Sbjct 20348 TCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 20407 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| |||| | || ||||| || ||||||||| || ||| Sbjct 20408 ATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTG 20467 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || ||||| | |||||||| Sbjct 20468 TCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACG 20527 Query 34971 AAGATCTGCATATTC 34985 ||||||||||| ||| Sbjct 20528 AAGATCTGCATCTTC 20542 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || |||||||| || || || || Sbjct 19892 TCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 19951 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| |||| | || ||||| || ||||||||| || ||| Sbjct 19952 ATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTG 20011 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || ||||| | |||||||| Sbjct 20012 TCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACG 20071 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 20072 AAGATCTGCAT 20082 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || |||||||| || || || || Sbjct 20120 TCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 20179 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| |||| | || ||||| || ||||||||| || ||| Sbjct 20180 ATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTATCTTGAATCTTCTGCTTCACGTTG 20239 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || ||||| | |||||||| Sbjct 20240 TCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACG 20299 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 20300 AAGATCTGCAT 20310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324616531779792