Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq46 185 7e-42 seq86 86.0 5e-12 >seq46 Length=92734 Score = 185 bits (204), Expect = 7e-42 Identities = 459/678 (68%), Gaps = 23/678 (3%) Strand=Plus/Plus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| ||| || || |||||||| | || || || || ||||| || | | || Sbjct 3657 AGCTGTTTCTGAAGTGGCTCCACGTGGTTGAGATACACATGTGCGTCACCGATGACATGA 3716 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29910 |||||||| || |||| || || | || || || |||| ||| || || | |||| Sbjct 3717 ACAAACTCGCCAGGTTTCAGTCCTGCCACCTGCGCTATCAATCGCGTTAGCAGCGCGTAG 3776 Query 29911 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 29970 ||||||||||| || ||||| ||||| |||||||| |||| | |||||| | ||| ||| Sbjct 3777 CTGGCGATGTTGAATGGTACGCCGAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAC 3836 Query 29971 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATG 30030 || | ||| ||||| |||||| ||||| || | |||||||||| || || ||||| Sbjct 3837 GACAACTCACCGTCTGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGCAGCGCCATT 3896 Query 30031 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT-GTT 30089 | || ||||||||| || ||| | || || | ||| ||||| || Sbjct 3897 TCATTGAGATCAGCGGGGTTCCACGCCGACAGCACAATCCGGCGGTCAGTGGGGTTCGTA 3956 Query 30090 C-CTG-ATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGC 30146 | | | || | ||| | ||| ||||| ||||| || || | ||||| || Sbjct 3957 CGCAGCTTGTGAATCAC----CTCTGCGAGCTGGTCCACGCCTTGGCCAGTATAGTCCGC 4012 Query 30147 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30206 ||||| |||||| | || || ||||| | ||| ||||| || || |||||||| || Sbjct 4013 ATGCATGTTCGTGTATTTGGCACCAAAATGGCGCCATTGGAAACCATAGACCGGTCCAAG 4072 Query 30207 GTCTCCCTCTTCCCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30265 ||||| | |||| ||| || || || || |||||| | || | || || ||| Sbjct 4073 ATCTCCTACCTCCC-GTGACTGCAATCCTCTACTGTCCAGGTACTCACGCGATCCATTGC 4131 Query 30266 CGTCCCAGATCTTTACCCCCTTCT-CGGAGAGC-TCTTTGGAGTTTGTGGACCCTCTGAC 30323 |||||||||| | | |||||| | || ||| | | || | | ||| || || | Sbjct 4132 CGTCCCAGATATGAATATCCTTCTGCTGA-AGCGTGTGTGCA-CTCGTGTCGCCACTAAT 4189 Query 30324 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAGGG 30382 ||||||||||||||||||| | || | ||| || |||||||| ||||| || | || Sbjct 4190 GAACCACAGCAGCTCCTCCGCCACACCTCGCCAGAATACCCTCTTAGTCGTCAGCAACGG 4249 Query 30383 GAA---ACTGTCCCTTGAGGCCGTACATGGC--CTGAGAACCAAACACGGACAAGACTCC 30437 ||| | ||| || | || | || || | ||||| ||||| || |||| || Sbjct 4250 GAATACATTGTTCC-TCAGAC--TAAATCTCATCTGAGCCCCAAAAACCGACAGCGTCCC 4306 Query 30438 CGTGCCCGTCCTGTCTCC 30455 ||| ||||| | |||||| Sbjct 4307 CGTTCCCGTTCGGTCTCC 4324 >seq86 Length=68935 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 48422 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 48481 ||| ||||| || ||||| | |||||| | |||||||| ||| | || ||||| || Sbjct 19558 GTTGAACAGGATCACGCCAACGTTGCCGCGGTAGTCGGCGTCGATGACACCGGCGCCAGT 19617 Query 48482 GTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 48541 ||| || || || ||||| |||||||| || | || ||||| | | ||||| ||| Sbjct 19618 GTCGATGAACTTCTTCAGTGCCAGGCCAGAGCGAGGCGCCACGCGGGCGTAGCAGCCGTC 19677 Query 48542 GGGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCCCTGCC 48583 ||||| | | ||||||||||||| || || || |||| Sbjct 19678 GGGCACAGCGATGACCAGGTCCGTCTTGACGAGCCCCTTGCC 19719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408596116163522