Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq608 297 4e-75 seq21 239 8e-58 >seq608 Length=23317 Score = 297 bits (328), Expect = 4e-75 Identities = 1138/1767 (64%), Gaps = 65/1767 (4%) Strand=Plus/Minus Query 212595 TAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTC 212654 ||||||||||| ||||| || ||||| ||| ||| | |||||| | |||||| || Sbjct 3866 TAGTACATGCCCGTCTTGAGTCCCTTCTTCCAAGCGTAGAAGTGCATGGATGTGAGCTT- 3808 Query 212655 TTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGG 212714 ||| | | || |||| | | | ||| | ||| || |||||||||||| Sbjct 3807 ----GCTGA-TCGTCGGGTC---------GGCAATATGGATGTTGAGCGACTGACTCTGG 3762 Query 212715 TCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCAC 212774 ||| | | | | | ||| || | || || | | |||| || ||||||| Sbjct 3761 CAGATGTAAGCGCCACGGTCGGCTGACAGATCCAGCACCGACTTCTGCTTGATCTCCCAC 3702 Query 212775 ACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCC 212834 || |||||| | | || || | || || |||| | | || |||||||||||||| Sbjct 3701 ACCGTCTTGTACTTGTCCTTTACGTTGTCCGGGATGACCTTGACCTTCTGCACAGACCCA 3642 Query 212835 CTGTGTATGGTCAG---CTGCAGGCGCATGTCCTCGT---TCCAGAGGCCCCTGGTCTC- 212887 | || | |||| ||| ||| | ||||| |||||| |||| | || Sbjct 3641 CCGTC---GTTCAGGATCTGGTTGCGAA---CCTCGGGCGTCCAGATGCCCA-GCTCGAT 3589 Query 212888 CAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTG 212947 ||| ||| | |||| ||| || ||| ||| ||||| | ||||| | | | Sbjct 3588 CAGCTCCTTCATTAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGGCGGTT 3529 Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||| | ||| || ||||||||||||||| ||| ||||| ||||| ||||| ||||| Sbjct 3528 GTACATGTTCGATGTGTAGGGCTCGATGGACTCATTGTTGCCCAGGATCTGCGCAGTCGA 3469 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG-- 213065 || || |||||||| |||||||| || ||| | | ||||| | | || | | Sbjct 3468 AGCCGTAGGCATGGGGGCCACCAGTAGCGAGTTACGGATACCGTGTTTG---ATAACGTT 3412 Query 213066 CGCCGA-AGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACAT 213124 | || ||| | ||||||| ||| ||| ||| | | | ||| |||||| Sbjct 3411 CTCCTTCAGCGCAGCCCAGTTCCACAGGCCGGAC--GACGGGGAG----ACGCCCCACAT 3358 Query 213125 GTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATG 213184 ||| ||||| ||||| || || || | || ||||||| | | ||| ||||| | Sbjct 3357 GTCGAACTGGAAGATACCCTTACTAGCAGGCGAGCCCTGGAACGTCTCGTAAGGGCCCAG 3298 Query 213185 CTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTC 213244 ||||||||| | ||| ||||| || || | || ||||||||||| || || || | Sbjct 3297 CTCCTTGGCAATCTCCATGGACGTCTCCATTGACGCATAGTAGATGGTCTCGAAAATGTT 3238 Query 213245 CCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATC 213304 | |||| |||| |||| | | ||| | ||||| | ||| | || Sbjct 3237 CTTGTTCAGCTCGCGAGCCTGTTCGCTTTCGAACGCGTAGTTCATGAGGATGAAAGCGTC 3178 Query 213305 AGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACT 213363 ||||| ||||| || || || || | || | ||| | || ||| |||||| |||| || Sbjct 3177 GGCCAGACCCTGAACACCAATACCCACAGGGCGGTGGCGCATGTTGGACTTGCGAGC-CT 3119 Query 213364 CCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGG 213423 || | | |||||| ||||| |||||| | ||||||||| || ||||| |||| || | Sbjct 3118 CCACGACTGGGTAATAGTTGATGTCGATCACCTTGTTGAGATTACGGGTCACCACCTTAG 3059 Query 213424 TGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCA 213483 | || | | || | || || ||||| || ||||||| ||| || | ||||| Sbjct 3058 TCACGTCGTAGAGCTTCTGGTAGTTGAAAACT------CCGTCCTCCACGAATTTAGGCA 3005 Query 213484 GGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCT 213543 | || | | |||| |||||| || |||||||| | | ||||||||||| | || Sbjct 3004 GTGCTACGGACGCCAAGTTGCACACCGCCACCTCATCCGGCGACGTGTACTCCATCACCT 2945 Query 213544 CGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGG 213603 || ||||| ||| ||| | ||||| ||||||| ||||| ||||| ||||| ||||| Sbjct 2944 CGCAGCACAAGTTACTGGAGCGGATCGTGCCCAAATTCTGCTGGTTGGACTTGCGGTTGG 2885 Query 213604 CAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663 | | |||||||| |||||| |||| || ||||| | ||| | ||| ||| | Sbjct 2884 CCGCGTCCTTGTACAGCATGAAGGGCACACCCGTCTCAATCTGCGCGTCCAAGATCGAGA 2825 Query 213664 TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTT 213723 ||| || | | || |||| | | | || ||| | | |||||||| | Sbjct 2824 ACCACAGCTGCTGTGCATTGATCGTCTTGCGCGCACGTCCCTCCTT---CTCGTACTTCT 2768 Query 213724 CGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA-CAGGATGCGGGA 213782 ||||||| | || |||| |||||| | || || || ||| | || |||| Sbjct 2767 CGTAGAGAGTTTCAAACTCGTCTCCCCAGCACTCGTAGAGGCCAGGAGCTTCAT-TGGGA 2709 Query 213783 CACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCAC 213842 || | | ||||| | || | || || | | ||||||||| || ||||||||| Sbjct 2708 CAGAACAAACTCCACTTGCCATTGGCTTCCACGCGTTTCATGAACAGATCAGGGACCCAC 2649 Query 213843 AGCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGA 213899 || ||| ||||| ||| | | | | ||||| || ||| || || || Sbjct 2648 AGAGCGTAGAACAAGTCACGAGCACGGTGCAACTCGT---TGCCGTGGTTCTTACGTAGG 2592 Query 213900 TCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGC 213959 || | || || |||| ||| || ||||||||||||| |||||| || || | || Sbjct 2591 TCCAAGAACTCGAAGACGTCAGCATGCCACGGCTCCAAGTAGATAGCGAACGATCCTTTA 2532 Query 213960 CTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGT 214016 | ||| |||||||||||||| || ||| ||| || | ||||| | || Sbjct 2531 CGTTTGCCTCCGCCCTGGTCCACGTACCGAGCCGTGTCGTTAAACACCCGCAGCATTGGG 2472 Query 214017 ACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTG 214076 | | || |||||| ||||| || || || || | | ||| | | |||| Sbjct 2471 ATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAACTGTTAGTGGCTCGGATGTTG 2412 Query 214077 CTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTC 214136 ||| || || || || || || | |||||||| || || || ||| ||| Sbjct 2411 TGCATACTGATGCCAATACCCCCAGCCCATTTGGAGATGCACGCACACTGCTTCAGAGTG 2352 Query 214137 TCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGG 214196 || |||||| | ||| ||| || | | |||||||||||| || ||||| Sbjct 2351 TCGTAGATGCCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGAGGACAGCTGA 2292 Query 214197 GGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAG 214256 || | | | ||||| |||||| |||||||| ||||||| | | ||||| | || Sbjct 2291 GGACGCGGAGTGCCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAAGAACTTCTGCGAC 2232 Query 214257 AGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC 214316 | | | ||| |||||||| ||| |||||| | ||||||||| ||||| ||| Sbjct 2231 ATCAACTCGTACGTCTCCAGAGCTGCCTGGATGTTGCTCTTGTGGATGCCCAGAGC-CAC 2173 Query 214317 -CTCATCAGCATGTGCTGGGGCCTCTC 214342 | ||| | ||| ||||| |||| ||| Sbjct 2172 GCGCATAATCATTTGCTGCGGCCGCTC 2146 >seq21 Length=112267 Score = 239 bits (264), Expect = 8e-58 Identities = 561/841 (67%), Gaps = 17/841 (2%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| || ||||| ||||| |||| | ||||| | ||||| Sbjct 22356 GTACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCAT 22297 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| || || | | | || |||| | |||||| | Sbjct 22296 CCAGTCGAACGGGTTCTTGACGTGGTAGATCTTGGACACACCCAGTGAGTACAGCAGACG 22237 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||| | |||||||| ||||||||| || || ||| Sbjct 22236 GTCAGCCACGAACTCGATGTACTGGCACATGAGGCCCGAGTTCATGCCGATCAGCTCCAC 22177 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | | |||||| | ||| ||| ||| || || | ||| |||| | Sbjct 22176 AGGGAGCGAGTCACACACAAACTCGTGCTCAATCACCACCGCGTCACGCACGATCTCATG 22117 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 || ||| ||| | |||||||| ||| ||||| || | | |||||| ||||| Sbjct 22116 CACACGGCTCTCCGGCAGTTTGTTGACCAG---CTTGGAGTACATGAGGCAGGCGAAGTC 22060 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| ||| || || |||||||| ||| |||| ||||||| |||||||||||||| Sbjct 22059 CGTGTGCATGCCCTCATCACGGCTGATCAGCTCGTTCGAGAAGCTGAGACCAGGCATGAG 22000 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| ||||| |||||||||||||||||||| Sbjct 21999 GCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCCTCCAC 21940 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGATCCAGGAAA 48320 | |||||||| || | ||| | | || | | | || | | ||| | Sbjct 21939 CGAGGCGAACGCCAGCAGACGCTCCGGGTATGACGACACACGTGGGT-CGCACCACTTGA 21881 Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC---CCGGAAGAGCT 48377 | ||||||| || |||||| | | ||| || || ||||| ||||| | | ||| | | Sbjct 21880 GTGCCCAGTTGGCTTTCTTCGTCACGCACGGGATGGTCTCAATGGCACGCAGCAAGTGGT 21821 Query 48378 TCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAG 48434 ||| |||| |||||| | || || | |||||||| | ||| | ||| | Sbjct 21820 CCTT---CTCAATGGCGTCCTTGATGTACGTGTCAATGAGCAGC---GAGTAGACCTCCG 21767 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| | ||||| || || |||||||| ||||||||| | ||||| |||||||| Sbjct 21766 AGTGGATGTTCTCGATGGCAATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGCACCTGCA 21707 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 |||| || ||| || ||| ||||| || || || ||||| || || || | Sbjct 21706 CTTCGTTGCTGAAGTTCATGGCCAGGTTCTCGTTTACGATGCCATCACTGGCCGCGAAAA 21647 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTA 48614 |||| || ||||| || | ||| || |||||||||| | ||| |||| ||| | Sbjct 21646 AGGCGAGCACATGCTTGACGAAGTGACGCTCGTTGTCCGAGAGGTTCGCCCAGTCCTTGA 21587 Query 48615 CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACA 48674 ||| | ||||||||| || || | ||||| || || || || || ||||||| Sbjct 21586 GGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAAAACGAAGCCTCGGCCTTCTTGTACA 21527 Query 48675 T 48675 | Sbjct 21526 T 21526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931482567093760