Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq21 167 4e-36 seq608 84.2 4e-11 >seq21 Length=112267 Score = 167 bits (184), Expect = 4e-36 Identities = 552/852 (65%), Gaps = 29/852 (3%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | || ||||| ||||| ||| | || |||| Sbjct 21520 TGGCAGATGTACAAGAAGGCCGAGGCTTCGTTTTGGACGGCCGAGGAGCTGGACCTGGTG 21579 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| | | | |||| || || | |||||| || || ||||| | ||| Sbjct 21580 CACGACCTCAAGGACTGGGCGAACCTCTCGGACAACGAGCGTCACTTCGTCAAGCATGTG 21639 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 | || || || || ||| |||||| || || |||||||| ||| | || |||| | Sbjct 21640 CTCGCCTTTTTCGCGGCCAGTGATGGCATCGTAAACGAGAACCTGGCCATGAACTTCAGC 21699 Query 25660 AGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | ||||||||| ||| ||||| || |||||||| |||||||| |||||||| Sbjct 21700 AACGAAGTGCAG---GTGCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATTGCCATCGAG 21756 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCC 25773 || | ||||| ||||| || | ||| || || |||||||| | |||| | Sbjct 21757 AACATCCACTCGGAGGTCTA---CTCGCTGCTCATTGACACGTACATCAAGGACGCCATT 21813 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| || | || | ||||||| ||| ||| || || | | || ||| || Sbjct 21814 GAGAAGGACCACTTGCTGCGTGCCATTGAGACCATCCCGTGCGTGACGAAGAAAGCCAAC 21873 Query 25834 TGGGCCATGAAGTGGATCAACAGCCA-GAGCG-CTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||| | |||||| | || ||| | | | | | | ||||| ||| | || | Sbjct 21874 TGGGCACTCAAGTGGTGCGAC--CCACGTGTGTCGTCATACCCGGAGCGTCTGCTGGCGT 21931 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 | || | |||||||||||||| ||| || || || ||| ||||||||||||||||| Sbjct 21932 TCGCCTCGGTGGAGGGCATCTTCTTCTCGGGCTCCTTCTGC-TCCATCTTCTGGCTCAAG 21990 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || |||||| || || ||| || |||||||| |||||| | || ||||| Sbjct 21991 AAGCGCGGCCTCATGCCTGGTCTCAGCTTCTCGAACGAGCTGATCAGCCGTGATGAGGGC 22050 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 | |||| || || |||||||| | ||| | | | || || ||||| || | | Sbjct 22051 ATGCACACGGACTTCGCCTGCCTCATGTACTC---CAAGCTGGTCAACAAA-CTGCCGGA 22106 Query 26071 GAGACCGTCTACA--GTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128 ||| |||| | || ||| | || || |||| ||| ||| | |||||| Sbjct 22107 GAG-CCGTGTGCATGAGATCGTGCGTGACGCGGTGGTGATTGAGCACGAGTTTGTGTGTG 22165 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGT 26188 | ||||||||| | |||||| |||| ||||| |||| Sbjct 22166 ACTCGCTCCCTGTGGAGCTGATCGGCATGAACTCGGGCCTCATGTGCCAGTACATCGAGT 22225 Query 26189 ATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCC--TAA 26246 ||||| |||| |||||||| | ||||| | ||| ||||| ||| | || Sbjct 22226 TCGTGGCTGACCGTCTGCTGTACTCACTGGGTGTGTCCAAGATCTAC--CACGTCAAGAA 22283 Query 26247 CCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAG 26306 ||||||||||| ||||| | || || | | || ||||||||||| || || ||| | Sbjct 22284 CCCGTTCGACTGGATGGACATGATCTCTCTCCAGGGCAAGACCAACTTTTTCGAGAAGCG 22343 Query 26307 GGTCGGCGACTA 26318 || ||||| || Sbjct 22344 TGTGGGCGAGTA 22355 >seq608 Length=23317 Score = 84.2 bits (92), Expect = 4e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 221068 CTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCACTTG 221127 |||| |||||| | ||| ||| |||| |||| | | || ||||||||| | Sbjct 3615 CTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATTAGGTACTTGTTCACGATCGT 3556 Query 221128 GAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTCTC 221187 ||| || || | ||||| | | | ||||| ||| || ||| | || |||||| ||| Sbjct 3555 GAACTCACCAGCAAGCACACGGCGGTTGTACATGTTCGATGTGTAGGGCTCGATGGACTC 3496 Query 221188 GTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241 ||||||||||||||||| || || || || |||||||| |||||||| || Sbjct 3495 ATTGTTGCCCAGGATCTGCGCAGTCGAAGCCGTAGGCATGGGGGCCACCAGTAG 3442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928794712044160