Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1056 129 2e-24 seq6 102 2e-16 seq84 100 8e-16 >seq1056 Length=12981 Score = 129 bits (142), Expect = 2e-24 Identities = 185/256 (72%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || |||||||| |||||||| | ||| || ||||| |||||||| | ||| ||||| Sbjct 9580 CGGCGCTGAATGTAACCAGTCTCGGCTGTCTTCACAGCAGTATCAATCAAACCTTCACGA 9639 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCT 302710 ||||||||||| |||||||| | ||| | |||| || | ||| ||| | | ||| | | Sbjct 9640 CCACCCATAGCGTGGAAGAAGAACTCCTGCGGT-GTCAAACCCTTCAA-ATACGAGTTTT 9697 Query 302711 CAACGAAACCACGCGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCC 302767 | || |||||||| ||| || | ||| || |||| |||| ||||| || | Sbjct 9698 CCACAAAACCACGACTCTCAGGGCCCAGATCATC---CTTGCCGTAGTGCGGCAGCGTAC 9754 Query 302768 TGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAA 302827 || | | ||||| |||||||||||||| || || |||||||| |||| || | || Sbjct 9755 GGTGGTTGAAACCGTACGGGATACGCTTTCCTTCGACATTCTGCTGACCCACACAAGCAA 9814 Query 302828 TCATCTGCGAAATATT 302843 | || |||||||| || Sbjct 9815 TAATTTGCGAAATGTT 9830 >seq6 Length=160627 Score = 102 bits (112), Expect = 2e-16 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || || |||||||||||||| ||||| ||| | || || || || || Sbjct 12225 CTTGATAGCCGAAGCAAGGGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTGGGCTCATC 12284 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | || | |||||| | || |||||| || |||||||| || ||||| |||||||| Sbjct 12285 AAGCACCAGGATGTGCGGGTTCAGCCACATAGCGGCAGCCAGCACAACCTTCACCTTCTG 12344 Query 354123 TCCGCCTGATAGTGCGTGAATCTTGGAATATGTACCGAACTGCGATTCAAGGTTGAAATG 354182 ||||| || || | | || || | |||||||||| | | ||| ||| Sbjct 12345 ACCGCCGGACAGACCACGCATGCGCGAGTGGGTACCGAACTCGGCACCCAGGCCGAAGCA 12404 Query 354183 GTCGAGATGTTTCTGTACG 354201 |||||| || ||||| ||| Sbjct 12405 GTCGAGGTGCTTCTGCACG 12423 >seq84 Length=89610 Score = 100 bits (110), Expect = 8e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || |||| ||||||||||||||| || || | ||| || ||||| || ||||| Sbjct 17491 CCGTGAGAGATCAGACAATCACGCTCCATCTCTCCCATACGCAGCCCACCCTCACGAGCA 17432 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || ||| || ||||| || | Sbjct 17431 CGACCCTCCATGGGCTGGCGCGTCAGCATGGTCACAGGGCCACGCGAGCGCGAGTGGATC 17372 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || || | ||||||||||| || ||||||||||| | ||| ||||||||||| Sbjct 17371 TTGTCGTCGACCATATGCTTCAGGCGCTGGTAGAACGTGGGTCCGATGAAGAT 17319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471736248041818