Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq837 111 1e-19 seq322 102 7e-17 seq608 98.7 9e-16 seq552 91.5 1e-13 >seq837 Length=16651 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || ||||| || || || | | Sbjct 6024 GATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTC 6083 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || || ||||| ||||| ||||| || || ||||| || Sbjct 6084 GGACTCGATCGACAACGTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCA 6143 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || || ||||| ||||| || ||||||||||| | | || || || || Sbjct 6144 GCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAA 6203 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 6204 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 6252 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || ||||| || || || | | Sbjct 6253 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 6312 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||| ||||| ||||| || || ||||| || Sbjct 6313 GACTCGATCGACAACGTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCAG 6372 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || || ||||| ||||| || ||||||||||| | | || || || ||| Sbjct 6373 CAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAAC 6432 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 6433 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 6480 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || ||||| || || || | | Sbjct 6481 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 6540 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||| ||||| ||||| || || ||||| || Sbjct 6541 GACTCGATCGACAACGTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCAG 6600 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || || ||||| ||||| || ||||||||||| | | || || || ||| Sbjct 6601 CAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAAC 6660 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| ||||| |||| |||| || || Sbjct 6661 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGG 6707 >seq322 Length=35284 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || ||| | || || || || || ||||| || || || | | Sbjct 20539 GATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTC 20480 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || ||||| ||||| || ||||| || || || || || Sbjct 20479 GGACTCGATCGACAACGTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCA 20420 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| ||||||| || || || ||||||||||| | | || || || || Sbjct 20419 GCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAA 20360 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 20359 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGC 20311 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || ||||| || || || | | Sbjct 20310 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCG 20251 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| ||||| || ||||| || || || || || Sbjct 20250 GACTCGATCGACAACGTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCAG 20191 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||| || || || ||||||||||| | | || || || ||| Sbjct 20190 CAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAAC 20131 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 20130 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGC 20083 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || ||||| || || || | | Sbjct 20082 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCG 20023 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| ||||| || ||||| || || || || || Sbjct 20022 GACTCGATCGACAACGTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCAG 19963 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||| || || || ||||||||||| | | || || || ||| Sbjct 19962 CAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAAC 19903 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || || ||||| |||| | ||||| || Sbjct 19902 ATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGCGTCTTCGCGGCGG 19856 >seq608 Length=23317 Score = 98.7 bits (108), Expect = 9e-16 Identities = 890/1427 (62%), Gaps = 79/1427 (6%) Strand=Plus/Minus Query 138471 CAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATAC 138530 || || ||||| || || || || || |||| | || | || ||||| || | || Sbjct 3597 CAGCTCGATCAGCTCCTTCATTAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCAC 3538 Query 138531 TCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTG 138590 || || ||| ||||| ||| | ||||| | || || ||||| ||||| ||||| Sbjct 3537 ACGGCGGTTGTACATGTTCGATGTGTAGGGCTCGATGGACTCATTGTTGCCCAGGATCTG 3478 Query 138591 AGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTT 138650 || || | || || |||||| ||||||| || || || || | |||||| || Sbjct 3477 CGCAGTCGAAGCCGTAGGCATGGGGGCCACCAGTAGCGAGTTACGGATACCGTGT---TT 3421 Query 138651 GATT-CGTTC--CTTGAGCGACGACCAGTCCCACAAATCG--CTA-GGTTTTTTGTTCCA 138704 ||| ||||| ||| |||| | ||||| ||||| || | | || | ||| Sbjct 3420 GATAACGTTCTCCTTCAGCGCAGCCCAGTTCCACAGGCCGGACGACGGGGAGACGCCCCA 3361 Query 138705 CATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACC 138764 ||| ||| |||| || || ||| ||| || || ||| | | ||| ||||| || Sbjct 3360 CATGTCGAACTGGAAGATACCCTTACTAGCAGGCGAGCCCTGGAACGTCTCGTAAGGGCC 3301 Query 138765 AAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAAT 138824 | ||| | || | ||| || || ||| | | ||||||| || || ||| ||| Sbjct 3300 CAGCTCCTTGGCAATCTCCATGGACGTCTCCATTGACGCATAGTAGATGGTCTCGAAAAT 3241 Query 138825 CTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGG------CATGCGGAGCATCGT 138878 | || || ||| || |||| |||| ||| ||| |||| ||| | Sbjct 3240 GTTCTTGTTCAGCTCGCGAGCCTGTTCGCTTTCGAACGCGTAGTTCATGAGGA------T 3187 Query 138879 GAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGC 138938 ||| ||||||||||| || || || || | || |||||||| ||||||| || ||| Sbjct 3186 GAAAGCGTCGGCCAGACCCTGAACACCAATACCCACAGGGCGGTGGCGCATGTTGGAC-- 3129 Query 138939 TTTTGCG-GCTTC---GATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCA 138994 ||||| || || || || |||||||| | ||||| | ||||| | ||| || Sbjct 3128 --TTGCGAGCCTCCACGACTGGGTAATAGTTGATGTCGATCACCTTGTTGAGATTACGGG 3071 Query 138995 CGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGA 139054 |||||||||||| | | | | | ||| | ||| |||| | Sbjct 3070 TCACCACCTTAGTCACGT-CGTAGAGC-TTC----TGGTA---------GTTGAAAACTC 3026 Query 139055 CGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGG 139114 || | || || ||||| | | || || | ||||||||||||||| || || | Sbjct 3025 CGTCCTCCACGAATTTAGGCAGTGCTACGGACGCCAAGTTGCACACCGCCACCTCATCCG 2966 Query 139115 G-GTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTT 139173 | | || |||| || | | ||| ||||| ||||| | |||||| || ||||| Sbjct 2965 GCGACG-TGTACTCCATCACCTCGCAGCACAAGTTACTGGAGCGGATCGTGCCCAAATTC 2907 Query 139174 TGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCC 139233 || || ||| || ||||| || || ||||| ||||| | || || || || Sbjct 2906 TGCTGGTTGGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAAGGGCACACCCGTCTCA 2847 Query 139234 ACTTGTGTCTCTATAATGAATTTGAACAA--------GTCCCTAGCTTGTATTTGACGCA 139285 | || | || | || | |||| | || | | | | || || |||| Sbjct 2846 ATCTGCGCGTCCAAGATCGA---GAACCACAGCTGCTGTGCATTGATCGTCTTGCGCGCA 2790 Query 139286 CGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCG 139344 ||| | || ||||||||| |||||||| || || |||| | || || Sbjct 2789 CGTC-----CCTCCTTCTCGTACTTCTCGTAGAGAGTTTCAAACTCGT-CTCCCCAGCAC 2736 Query 139345 TCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACG 139404 || | || | || | | ||||| | | ||| ||| || || | ||| Sbjct 2735 TCGTAGAGGCCAGGAGCTTCATTGGGACAGAACAAACTCCACTTGCCATTGGCTTCCACG 2676 Query 139405 CGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTT-ATC 139463 || ||||||||||||| || | ||||| |||| | | ||| || || || | | | Sbjct 2675 CGTTTCATGAACAGATCAGGGACCCACAGAGCGTAGAACAAGTCACGAGCACGGTGCAAC 2616 Query 139464 TTCCGAACCCATG----TTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATG 139519 | || || || |||||| | || | ||| || || |||||||| ||||| | Sbjct 2615 T--CGTTGCCGTGGTTCTTACGT---AGGTCCAAGAACTCGAAGACGTCAGCATGCCACG 2561 Query 139520 GTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT---TGATCGACGTGTCGTA 139576 | |||| ||||| || | | ||||| |||||||| || || || |||| || Sbjct 2560 GCTCCAAGTAGATAGCGAACGATCCTTTACGTTTGCCTCCGCCCTGGTCCACGTACCGAG 2501 Query 139577 CAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTAC 139636 | | | || || || |||| ||| || | || | | | ||||| |||| | Sbjct 2500 CCGTGTCGTTAAACACCCGCAGCATTGGGATGATGCCATTGGACGAGCCGTTCGTGCCTC 2441 Query 139637 GGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATT 139696 ||||| |||||| ||||||| || || | | ||||||| || || || | ||| Sbjct 2440 GGATGTAACTGTTAGTGGCTCGGATGTTGTGCATACTGATGCCAATACCCCCAGCCCATT 2381 Query 139697 TGGATATTAAAACGCAATCGCGTAAT-GTCTCGTATATACCTCTTATGCTGTCGTCCTGC 139755 |||| || | | || | || | | || ||||| || || ||| |||||||||| Sbjct 2380 TGGAGATGCACGCACACT-GCTTCAGAGTGTCGTAGATGCCCTCAATGGAGTCGTCCTGC 2322 Query 139756 ATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTA 139815 || | | || ||||| || || || || || | ||||| || || || || Sbjct 2321 ATGGCCAGCAAGAAGCACGAGGACAGCTGAGGACGCGGAGTGCCAGCGTTGAAGAGCGTG 2262 Query 139816 GGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTC 139862 ||| | || |||||||| | | | ||||||||| |||||||| || Sbjct 2261 GGAGTGGCATGCGTGAAGAACTTCTGCGACATCAACTCGTACGTCTC 2215 >seq552 Length=27436 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || | || Sbjct 16413 ATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCATCACGCTGGACGTGGAGCCGTCC 16472 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || ||||| || || || || Sbjct 16473 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATCCCGCCTGACCAG 16532 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||| ||||| | | | |||| || || ||| Sbjct 16533 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCGGACTACAAC 16592 Query 24884 ATTCAAAAGG 24893 || || |||| Sbjct 16593 ATCCAGAAGG 16602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449873339271920