Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_022761.1 Length=146193 Score E Sequences producing significant alignments: (Bits) Value seq3219 84.2 2e-11 >seq3219 Length=1827 Score = 84.2 bits (92), Expect = 2e-11 Identities = 320/491 (65%), Gaps = 35/491 (7%) Strand=Plus/Plus Query 36685 ACGCATGGATCTTGTTAAGAAAGCATATTGGGTTCTCAGTAATCTTTACATTACTGTAGC 36744 ||| |||||||| |||||| |||| || |||| | || || | ||||| || | ||| Sbjct 1062 ACGTATGGATCTCGTTAAGGAAGCTTACTGGGCAATGAGCAACATGTACATGACAGCAGC 1121 Query 36745 TACACCCACAATGGGGAATGCAGGTAGACCAGATGGTCAGTTAAGCTCG----TGTTTCA 36800 |||||| || ||| ||||| || | | || ||| | | || | || |||| Sbjct 1122 TACACCTACGATGTCCAATGCGGGCAAAAAAG-TGGCCGGACAACTTTCCAGCTGCTTCA 1180 Query 36801 TTGGAACAGTAGAAGATTCCCTAGACAATATCTATGATAATAACAAAGATTCAGCTATGG 36860 ||| || || || |||||||| || |||| ||| |||| |||| ||| | Sbjct 1181 TTGATACCGTGGATGATTCCCTTGAGGGCATCTTCGATTCCAACACAGATGTAGC----G 1236 Query 36861 TGTCTAAGT----TTGGTGGGGGTATCGGGGTTTACATGGGTAAAATCCGTTCACTCAAC 36916 |||| || | || || || ||||| |||||| | |||||| || | | | | Sbjct 1237 CGTCTCAGCAAAATGGGCGGCGGCATCGGCGTTTACCTCGGTAAAGTCAGAGCTCGCG-- 1294 Query 36917 AGTT---ACATCCGTGGTATGAAAGGTA-AGTCTCAAGGTGTTATCCCTTGGAT---CAA 36969 ||| ||||||| ||| ||| || | ||| || || ||||||||||| | | Sbjct 1295 -GTTCGGACATCCGGGGTCACAAAAATACAAGCTCT-GGCGTAATCCCTTGGATTCGCCA 1352 Query 36970 AGGGCTTGAAAATACAGCAAATAGTGTAGACCAGCTAGGTCAGCGTAAAGGTGCTATTGC 37029 | || | ||||| || || ||||||||||| || ||||||||||| || || Sbjct 1353 A---CTAAATAATACTGCGGTCAGCGTAGACCAGCTTGGAACACGTAAAGGTGCGATCGC 1409 Query 37030 AGTTTACCTAGACATCTGGCATAAGGATGTTATGGAATTCCTGCAAATTGGTACT-AATA 37088 ||||| || ||| | | || || || | ||| ||||| | | || || || | Sbjct 1410 CGTTTATCTGGACGTTTTCCACAAAGACATCTTGGCCTTCCT-CGATCTGAAGCTGAACA 1468 Query 37089 ACGGGGATGA---GAGACGTAAAGCACGTGACGTATTCCCAGGCTTATGTGTACCAGACC 37145 | || || || || ||| || | ||||||||||| ||| | || | || |||| Sbjct 1469 ATGGTGACGAGCGGATGCGT---GCGCATGACGTATTCCACGGCATTTGCCTGCCTGACC 1525 Query 37146 TTTTCATGGAG 37156 | ||||||||| Sbjct 1526 TGTTCATGGAG 1536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467664379838320