Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_022767.1 Length=81656 Score E Sequences producing significant alignments: (Bits) Value seq3845 136 2e-27 >seq3845 Length=1196 Score = 136 bits (150), Expect = 2e-27 Identities = 255/374 (68%), Gaps = 8/374 (2%) Strand=Plus/Minus Query 63341 CGAAGTATTCACCTGTTTCCCATTCAGAACCTTCGAATAATGGATATTCTTCTTTCTCTT 63400 ||||||||| ||||||| ||| || ||||||| |||| ||||| | | |||| || | Sbjct 483 CGAAGTATTTGCCTGTTTGCCAATCGGAACCTTGGAATTTCGGATAATGTCCTTTTTCCT 424 Query 63401 TCGCCAATTTCATACTAGCTTTGATGGTATAATAAGCAATATCTTCGTACAAACTATCGT 63460 | | || | ||| || ||||| | | ||| ||| | ||| |||| | |||||| Sbjct 423 TGGACAGCTCCATGCTGGCTTTCACGAGCAGATAGTTAATTTTTTCATACAGATTATCGT 364 Query 63461 TAAAATCTACTGCTTCTTGTGTTTCCCATCTGATCTTTTTCTGAACAAGTAGATCGTGTA 63520 || | |||||||||| | |||||| | || || || |||| || | || | Sbjct 363 TATATGTGACTGCTTCTTCCGATTCCCAACGAATGCCTTCGAGAGCAAGCAGGTGATGGA 304 Query 63521 GACCATATGTTCCTAAACCAATAGCACGGTAACGTTTGTTAGTGTATT----TAGCAACA 63576 | || ||||||| | ||||| |||||||| | |||| ||||||| | ||| || Sbjct 303 GTCCGAATGTTCCCAGACCAACCGCACGGTATTGGCTGTTGGTGTATTGGGCTTGCAGCA 244 Query 63577 GCTAAAGGTAAATCGTTAAGATCGATAACGTTATCCAGCATACGAACCTGGATGTTAATT 63636 | || || ||| | ||||| ||||| ||||||||||||||||| || | Sbjct 243 CTTCAATGTT----GTTGATGTCGATTACGTTGTCCAGCATACGAACCTGAATCGGTACC 188 Query 63637 AATCGTTCTAACACATCATCAGTAACAGCACGAGCTAAGTTAATGGAAGACAAGTTACAT 63696 | || || || ||||||| || || ||||| || |||| |||||| || ||| || Sbjct 187 AGACGCTCCAATACATCATGAGGCACGGCACGTGCCAAGTGAATGGAGTTCAGGTTGCAG 128 Query 63697 ACTACCATATCACC 63710 ||||| | ||| || Sbjct 127 ACTACGAAATCGCC 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261160668266218