Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_022774.1 Length=80382 Score E Sequences producing significant alignments: (Bits) Value seq3845 102 4e-17 >seq3845 Length=1196 Score = 102 bits (112), Expect = 4e-17 Identities = 255/384 (66%), Gaps = 10/384 (3%) Strand=Plus/Minus Query 61317 CGAAATATTCACCTGTTTCCCATTCAGAACCTTCAAACAGTGGATATTCTTCTTTTTCCT 61376 |||| |||| ||||||| ||| || ||||||| || ||||| | | ||||||||| Sbjct 483 CGAAGTATTTGCCTGTTTGCCAATCGGAACCTTGGAATTTCGGATAATGTCCTTTTTCCT 424 Query 61377 TCGCTAATTCCATTGAAGCTTTGATGGTATAATAAGCAATATCTTCGTATAAACTATCAT 61436 | | | ||||| ||||| | | ||| ||| | ||| || | | |||| | Sbjct 423 TGGACAGCTCCATGCTGGCTTTCACGAGCAGATAGTTAATTTTTTCATACAGATTATCGT 364 Query 61437 TGAAATCT-ACAGCTTCTTGACTTTCCCATCTGATCTTTTTCTGAACAAGTAGATCATGT 61495 | | || | || ||||||| |||||| | || || || |||| || | ||| Sbjct 363 T-ATATGTGACTGCTTCTTCCGATTCCCAACGAATGCCTTCGAGAGCAAGCAGGTGATGG 305 Query 61496 AGACCATATGTTCCCAAACCAATAGCGCGGTAACGATGGTTAGTGTATT----TTGCAAC 61551 || || ||||||||| ||||| || ||||| | ||| ||||||| ||||| | Sbjct 304 AGTCCGAATGTTCCCAGACCAACCGCACGGTATTGGCTGTTGGTGTATTGGGCTTGCAGC 245 Query 61552 AGCTAAAGGTAAGTCATTAAGATCGATAACATTGTCCAGCATGCGAACTTGAATCGGAAT 61611 | | || || | || ||||| || ||||||||||| ||||| |||||||| | Sbjct 244 ACTTCAATGTTGTTGATG----TCGATTACGTTGTCCAGCATACGAACCTGAATCGGTAC 189 Query 61612 TAATCTTTCTAACACGTCATCAGTAACAGCACGAGCTAAATTAATGGAAGACAAGTTACA 61671 | | || || || |||| || || ||||| || || | |||||| || ||| || Sbjct 188 CAGACGCTCCAATACATCATGAGGCACGGCACGTGCCAAGTGAATGGAGTTCAGGTTGCA 129 Query 61672 TACTACCATATCACCTAACACTTT 61695 ||||| | ||| || |||||| Sbjct 128 GACTACGAAATCGCCCGGCACTTT 105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 257084082611622