Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_022981.1 Length=76323 Score E Sequences producing significant alignments: (Bits) Value seq924 149 3e-31 >seq924 Length=20493 Score = 149 bits (164), Expect = 3e-31 Identities = 397/601 (66%), Gaps = 28/601 (5%) Strand=Plus/Minus Query 66404 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 66463 ||||||||||| ||||||||||| || || || ||| | || ||| ||| | | Sbjct 8552 CGGGTGGTGGAGATCTACGGCCCCGAGAGCTCTGGCAAGACGACGCTGGCTCT----GAG 8497 Query 66464 GTG----GCCAATGCGCAGAAGGCCG---GTGGCAACGCCGCCTACATCGACGCTGAGCA 66516 || || | ||||||||| ||| |||| |||| ||||||||| ||||| Sbjct 8496 TTGCATTGCTCAGGCGCAGAAGACCGAGGGTGGAGTATGTGCCTTCATCGACGCGGAGCA 8437 Query 66517 CTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGT 66576 | || | || | | ||||||||||| || || || ||| ||||| ||| || Sbjct 8436 CGCCATTGATGCGCACTACGCCAAGGCTCTGGGAGTCGACATCGACGCCCTGTACGTCTC 8377 Query 66577 TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA 66636 ||||||||| | || || | || |||||||||| |||| ||| ||| || || | Sbjct 8376 GCAGCCGGACTCAGGTGAAGAAGCGCTGGAGATCGCTGACACGCTCATCAGATCGGGGGC 8317 Query 66637 GCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGG 66696 || | ||||||| | ||| |||||| || || ||||| || || ||||| || || Sbjct 8316 AGTGGACCTCGTCGTGCTGGACAGTGTGGCTGCACTCGTGCCACGTGCAGAGCTGGAGGG 8257 Query 66697 CGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAA 66756 || || || ||| || | | ||||| ||||| |||||| ||||| ||||||| Sbjct 8256 TGAGATGGGAGACCAGCAGATTGCTCTGCAGGCGCGACTCATGAGTCAGGCGCTGCGCAA 8197 Query 66757 GCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCG 66813 | ||||| | | |||| |||| ||| | | | | | |||||| | || Sbjct 8196 ATTGACCGGGTCGCTGTCCAAATCCAACTGCACCATTA---TTTTCCTGAACCAGATCCG 8140 Query 66814 CGAGAAGATCGGCAACGTGGGCTACGG----CCCGAATGAGACCACCACGGGCGGCAAGG 66869 ||||| | |||| | | || || |||| | | ||| || || |||| || Sbjct 8139 TCAGAAGGTGGGCATCAT---CTTTGGGTCTCCCG-AGGTGACGTCC---GGTGGCACGG 8087 Query 66870 CTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAG 66929 | ||| | | |||||| || || || |||| |||| |||| | || ||||| | Sbjct 8086 CGTTGCGCTACTACGCGTCGGTGCGGCTGGACATCCGCCGCAAGACGGCCATCAAGGAGG 8027 Query 66930 GCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGC 66989 |||| ||| ||||||||| || ||| ||||| | ||||||||||||||| ||| Sbjct 8026 GCGACCAGGTCGTCGGCAACGAGACGGTGGTCAAGGTGGCCAAGAACAAGCTGGCGTCGC 7967 Query 66990 C 66990 | Sbjct 7966 C 7966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244095965522136