Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq322 102 2e-16 seq837 89.7 1e-12 >seq322 Length=35284 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || |||||||| | || ||||| || ||| | |||| Sbjct 20067 AAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCGGACTCGATCGACAAC 20008 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| ||||||||||| || ||||| || ||| ||| ||| | || |||||| Sbjct 20007 GTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCAGCAACGCCTGATCTTC 19948 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| || || | ||| || ||| |||||| ||||||| ||||| Sbjct 19947 GCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAACATCCAGAAGGAGTCG 19888 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || || || || | ||||| Sbjct 19887 ACGCTGCATCTGGTGCTGCGTCTTCG 19862 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || |||||||| | || ||||| || ||| | |||| Sbjct 20295 AAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCGGACTCGATCGACAAC 20236 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| ||||||||||| || ||||| || ||| ||| ||| | || |||||| Sbjct 20235 GTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCAGCAACGCCTGATCTTC 20176 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| || || | ||| || ||| |||||| ||||||| ||||| Sbjct 20175 GCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAACATCCAGAAGGAGTCG 20116 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 20115 ACGCTGCACCTGGT 20102 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || |||||||| | || ||||| || ||| | |||| Sbjct 20523 AAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCGGACTCGATCGACAAC 20464 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| ||||||||||| || ||||| || ||| ||| ||| | || |||||| Sbjct 20463 GTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCAGCAACGCCTGATCTTC 20404 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| || || | ||| || ||| |||||| ||||||| ||||| Sbjct 20403 GCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAACATCCAGAAGGAGTCG 20344 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 20343 ACGCTGCACCTGGT 20330 >seq837 Length=16651 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||| | |||| Sbjct 6040 AAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAC 6099 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || || || || ||||| || ||| ||| || || | |||||| Sbjct 6100 GTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCAGCAGCGATTAATCTTC 6159 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || ||| || |||||| ||||||| ||||| Sbjct 6160 GCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAACATCCAGAAGGAGTCG 6219 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 6220 ACGCTGCACCTGGT 6233 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||| | |||| Sbjct 6268 AAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAC 6327 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || || || || ||||| || ||| ||| || || | |||||| Sbjct 6328 GTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCAGCAGCGATTAATCTTC 6387 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || ||| || |||||| ||||||| ||||| Sbjct 6388 GCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAACATCCAGAAGGAGTCG 6447 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 6448 ACGCTGCACCTGGT 6461 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||| | |||| Sbjct 6496 AAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAC 6555 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || || || || ||||| || ||| ||| || || | |||||| Sbjct 6556 GTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCAGCAGCGATTAATCTTC 6615 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || ||| || |||||| ||||||| ||||| Sbjct 6616 GCCGGCAAGCAGCTGGAGGACGGTCGTACGTTGAGTGACTACAACATCCAGAAGGAGTCG 6675 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 6676 ACGCTGCACCTGGT 6689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181755477071194