Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq46 246 4e-60 >seq46 Length=92734 Score = 246 bits (272), Expect = 4e-60 Identities = 456/660 (69%), Gaps = 17/660 (3%) Strand=Plus/Plus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||||||||||||||||| || || || ||||| || | | || ||||| || || Sbjct 3669 AGTGGCTCCACGTGGTTGAGATACACATGTGCGTCACCGATGACATGAACAAACTCGCCA 3728 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTG 147039 || || || || | ||| || || | || || ||||||| ||||||||| |||||| Sbjct 3729 GGTTTCAGTCCTGCCACCTGCGCTATCAATCGCGTTAGCAGCGCGTAGCTGGCGATGTTG 3788 Query 147040 AAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG 147099 || || || || || |||||||| |||| | |||||||| ||||||||| | ||| ||| Sbjct 3789 AATGGTACGCCGAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCACGACAACTCACCG 3848 Query 147100 TCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCC 147159 || |||||||| |||||||| | ||||||||||||||||||||||| | || || Sbjct 3849 TCTGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGCAGCGCCATTTCATTGAGATCA 3908 Query 147160 GCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCG 147219 ||||||||||| ||||| | ||| | ||| | | ||||||| | | || | Sbjct 3909 GCGGGGTTCCACGCCGACAGCACAATCCGGCGGTCAGTGGGGTTCGTACGCAGCTTGTGA 3968 Query 147220 ATAACCCACCTC----AGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCA 147274 || |||||| |||||||||||||| ||||| |||| | | ||| || | Sbjct 3969 AT----CACCTCTGCGAGCTGGTCCACGCCTTGGCCAGTATAGTCCG-CATGCATGTTCG 4023 Query 147275 CGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCT 147334 ||| |||| ||||| || | ||| ||||| || || || || || || || || | Sbjct 4024 TGTATTTGGCACCAAAATGGCGCCATTGGAAACCATAGACCGGTCCAAGATCTCC-TACC 4082 Query 147335 TTCTGTG-CGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATG 147393 | | ||| | || || | | || |||| | || || | | |||||||||| Sbjct 4083 TCCCGTGACTGCAATCCTCTACTGTCCAGGTACTCACGCGATCCATTGCCGTCCCAGATA 4142 Query 147394 CCCA-CTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAG 147452 | ||| | || || ||| | | |||| ||| | |||||||| ||||| Sbjct 4143 TGAATATCCTTCTGCTGA-AGCGTGTGTGCACTCGTGTCGCCACTAATGAACCACAGCAG 4201 Query 147453 CTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAA---CTGGTC 147509 ||||||| || || | ||| || |||||||| || ||||||| ||||| | || Sbjct 4202 CTCCTCCGCCACACCTCGCCAGAATACCCTCTTAGTCGTCAGCAACGGGAATACATTGTT 4261 Query 147510 CCTCAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTC 147569 |||||| | | ||| ||| ||||||| || |||||||| ||||| ||||| | ||| Sbjct 4262 CCTCAGACTAAATCTCATCTGAGCCCCAAAAACCGACAGCGTCCCCGTTCCCGTTCGGTC 4321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583456535409600