Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq837 141 8e-29 seq552 122 8e-23 seq322 122 8e-23 >seq837 Length=16651 Score = 141 bits (156), Expect = 8e-29 Identities = 175/237 (74%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 35501 TCTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTG 35560 |||| ||||||||||| | | || ||||| || | ||| |||||| || |||||| Sbjct 6716 TCTTAGTTTCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTG 6657 Query 35561 TAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGG 35620 || || ||| || || |||| ||||||||||| || || || || || ||||||||| Sbjct 6656 TAGTCACTCAACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGG 6597 Query 35621 TCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCT 35679 || | || | || ||||||||| ||| || ||||||| |||| | | || ||| Sbjct 6596 TCGGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGA 6538 Query 35680 CGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| |||| ||||||||| || || |||| ||| ||||| || |||||||| Sbjct 6537 CGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6481 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | ||| |||||| || |||||||| || | Sbjct 6251 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 6192 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| ||||||||||| || || || || || ||||||||||| | || Sbjct 6191 AACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGG 6132 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || ||||||||| ||| || ||||||| |||| | | || ||| || ||||| Sbjct 6131 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCAC 6073 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||||||| || || |||| ||| ||||| || |||||||| Sbjct 6072 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6025 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | ||| |||||| || |||||||| || | Sbjct 6479 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 6420 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| ||||||||||| || || || || || ||||||||||| | || Sbjct 6419 AACGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGG 6360 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || ||||||||| ||| || ||||||| |||| | | || ||| || ||||| Sbjct 6359 ATGCCTTCCTTGTCCTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCAC 6301 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||||||| || || |||| ||| ||||| || |||||||| Sbjct 6300 GTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6253 >seq552 Length=27436 Score = 122 bits (134), Expect = 8e-23 Identities = 149/200 (75%), Gaps = 5/200 (3%) Strand=Plus/Minus Query 35538 ACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTAC 35597 |||||| |||| || |||||||| || | || ||| || |||| || |||||||| | Sbjct 16608 ACGTAC---CCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGC 16552 Query 35598 CCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCT 35657 | || || |||| ||||||||||| | || | | |||||||||| ||| || |||| Sbjct 16551 CGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCT 16492 Query 35658 TCAGAGTTGCCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAA 35716 | | | ||| || | ||||| || ||||| |||| |||||| || || ||||||| Sbjct 16491 TGACA-TTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGG 16433 Query 35717 GTTTTCACAAATATCTGCAT 35736 || |||||||| |||||||| Sbjct 16432 GTCTTCACAAAGATCTGCAT 16413 >seq322 Length=35284 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 ||||| || || | | || ||||| ||| | ||| |||||| || |||||||| ||| Sbjct 19853 TTTCCGCCGCGAAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCG 19912 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 || || || |||| ||||||||||| || || || |||| || |||||||| | Sbjct 19913 CTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGC 19972 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTC 35685 || | || ||||| || ||||| ||||||| |||| | | || ||| || || Sbjct 19973 GGGATGCCTTCCTTATCTTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTC 20031 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || | ||||||||| || |||||||| || ||||| || |||||||| Sbjct 20032 CACGTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20082 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | || ||||| || | ||| |||||| || |||||||| ||| | Sbjct 20084 CCGCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 20143 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| ||||||||||| || || || |||| || |||||||| | || Sbjct 20144 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGG 20203 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || ||||| || ||||| ||||||| |||| | | || ||| || ||||| Sbjct 20204 ATGCCTTCCTTATCTTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCAC 20262 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||||||| || |||||||| || ||||| || |||||||| Sbjct 20263 GTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20310 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | || ||||| || | ||| |||||| || |||||||| ||| | Sbjct 20312 CCGCCACGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 20371 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| ||||||||||| || || || |||| || |||||||| | || Sbjct 20372 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGG 20431 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || ||||| || ||||| ||||||| |||| | | || ||| || ||||| Sbjct 20432 ATGCCTTCCTTATCTTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCAC 20490 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||||||| || |||||||| || ||||| || |||||||| Sbjct 20491 GTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450769290955120