Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq21 93.3 6e-14 >seq21 Length=112267 Score = 93.3 bits (102), Expect = 6e-14 Identities = 362/562 (64%), Gaps = 9/562 (2%) Strand=Plus/Minus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | |||||||||||| || | ||||||||| | || || | ||||| || | Sbjct 22078 ACATGAGGCAGGCGAAGTCCGTGTGCATGCCCTCATCACGGCTGATCAGCTCGTTCGAGA 22019 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCA 39727 | |||| |||||||| || || ||||| |||||||| || |||| |||| ||| | || Sbjct 22018 AGCTGAGACCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCC 21960 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 || ||||||||||| || || | || || || | || | ||| ||| | || Sbjct 21959 GAGAAGAAGATGCCCTCCACCGAGGCGAACGCCAGCAGACGCTCCGGGTATGACGACACA 21900 Query 39788 -TTATGT--ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 | || |||||| ||||||| | ||||||||| | || || || || || || Sbjct 21899 CGTGGGTCGCACCACTTGAGTGCCCAGTTGGCTTTCTTCGTCACGCACGGGATGGTCTCA 21840 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 || ||| | | | | || ||| || || | || || || || | ||| Sbjct 21839 ATGGCACGCAGCAAGTGGTCCTTCTCAATGGCGTCCTTGATGTACGTGTCAATGAGCAGC 21780 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 || | || || |||||||| || || || ||||| || ||||| || || | || Sbjct 21779 GAGTAGACCTCCGAGTGGATGTTCTCGATGGCAATCTGGAAGCCGTAGAAGCAGCGAGCC 21720 Query 39965 TCAGTAATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 || | | || || || || || || | |||| || || || || || |||| Sbjct 21719 TCGGGCACCTGCACTTCGTTGCTGAAGTTCAT--GGCCAGGTTCTCGTTTACGATGCCAT 21662 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082 |||| || || ||||| || | ||||| || | || | || | | | | | Sbjct 21661 CACTGGCCGCGAAAAAGGCGAGCACATGCTTGACGAAGTGACGCTCGTTGTCCGAGAGGT 21602 Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 | |||||| |||| || | | || | || || || ||||||||||| |||| Sbjct 21601 TCGCCCAGTCCTTGAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAAAACGAAGCCT 21542 Query 40143 CTGCCTTTTTGTACATGTTCCA 40164 | ||||| |||||||| | ||| Sbjct 21541 CGGCCTTCTTGTACATCTGCCA 21520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686871758442960