Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq46 87.8 1e-12 >seq46 Length=92734 Score = 87.8 bits (96), Expect = 1e-12 Identities = 304/464 (66%), Gaps = 8/464 (2%) Strand=Plus/Minus Query 40858 GGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAAT 40917 |||| | ||| |||||||| || || ||||| || || | ||| |||||||| || |||| Sbjct 4086 GGGAGGTAGGAGATCTTGGACCGGTCTATGGTTTCCAATGGCGCCATTTTGGTGCCAAAT 4027 Query 40918 ATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTA-CAGTGCGTTATA 40976 | | ||| | | || ||||| |||| |||| || | ||| | || || Sbjct 4026 ACACGAACATGCATGCGGACTATACTGGCCAAGGCGTGGACCAGCTCGCAGAG-GTGATT 3968 Query 40977 GATACGATTAAATCCGATCCCGATAG-CCGACGTATAATATTGTGCGCGTGGAACCCAAC 41035 | | | | | ||| ||| | | ||| || || | ||| ||||||||||| | Sbjct 3967 CACAAGCTGCG-TACGAACCCCACTGACCGCCGGATTGTGCTGTCGGCGTGGAACCCCGC 3909 Query 41036 GGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA- 41094 || | || ||||| |||| || || || |||| || ||||| ||||| ||| Sbjct 3908 TGATCTCAATGAAATGGCGCTGCCGCCGTGCCACATGTTCTGCCAGTTCTACGTG-GCAG 3850 Query 41095 ATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGT 41154 | ||||| |||| || || |||| || | || | ||||||||||| || || || | Sbjct 3849 ACGGTGAGTTGTCGTGCCAGATGTACCAGCGCTCGGCCGACATGGGACTCGGCGTACCAT 3790 Query 41155 TTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAAC 41214 | ||||| || || || || ||||| ||| |||| || || || | | |||| Sbjct 3789 TCAACATCGCCAGCTACGCGCTGCTAACGCGATTGATAGCGCAGGTGGCAGGACTGAAAC 3730 Query 41215 CTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCC-G 41273 |||| || |||||||| | || || | |||| | || | || ||| | ||||| Sbjct 3729 CTGGCGAGTTTGTTCATGTCATCGGTGACGCACATGTGTATCTCAACCACGTGGAGCCAC 3670 Query 41274 TTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCT 41317 || | | |||| || || || ||| | |||||||| || || Sbjct 3669 TTCAGA-AACAGCTAACGCGCGCACCGCGCCCATTTCCGACACT 3627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397435103005570