Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq608 257 2e-63 seq21 140 4e-28 seq30 100 4e-16 >seq608 Length=23317 Score = 257 bits (284), Expect = 2e-63 Identities = 1089/1691 (64%), Gaps = 72/1691 (4%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| ||||||||||| |||| |||||| || || | ||||| || | | ||| Sbjct 3867 GTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAAGCGTAGAAGTGCATGGATGTGAGCTT 3808 Query 117902 GGAGA-----GGGTTGG-ACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATG-A 117954 | || |||| || | | | ||| ||| | ||| ||| | |||| | Sbjct 3807 GCTGATCGTCGGGTCGGCAATATGGATGTTGAGCGACTGACTCTGGCA------GATGTA 3754 Query 117955 AGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCC 118014 |||| || || || || | || ||| | ||| |||| |||||| |||||||| ||| Sbjct 3753 AGCG-CCACGGTCGGCTGACAGATCCAGCACCGACTTCTGCTTGATCTCCCACACCGTCT 3695 Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCT 118074 |||| || ||| | | || ||||| || || || || | || ||||| | | Sbjct 3694 TGTACTTGTCCTTTACGTTGTCCGGGATGACCTTGACCTTCTGCACAGACCCACCGTCGT 3635 Query 118075 TGACCATGAGATCCTTCATATCCTTTGAC---CAGAGACCAATCTTTTTGAGATCCTCCA 118131 | || || | || | ||| | | |||| || | || | || |||| || Sbjct 3634 T---CAGGATCTGGTTGCGAACCTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCA 3578 Query 118132 CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 118191 || | ||| || || | |||||||| || || || | || || || | Sbjct 3577 TTAGGTACTTGTTCACGATCGTGAACTCACCAGCAAGCACACGGCGGTTGTACATGTTCG 3518 Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 118251 ||||| ||||| | | |||||||||| |||| ||| || || || || || || |||| Sbjct 3517 ATGTGTAGGGCTCGATGGACTCATTGTTGCCCAGGATCTGCGCAGTCGAAGCCGTAGGCA 3458 Query 118252 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGT 118311 |||| |||| || || |||||||| ||| | || ||| | ||||| || || Sbjct 3457 TGGGGGCCACCAGTAGCGAGTTACGGATACCGTGTTTGATAACGTTCTCCTTCAGCGCAG 3398 Query 118312 CCCAGT--CGTAGTT--GA-GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC 118366 |||||| | || || | | | || |||||| || ||||||| |||||| Sbjct 3397 CCCAGTTCCACAGGCCGGACGACGGGGAGACGCC--CCACATGTCGAACTGGAAGATACC 3340 Query 118367 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC--GCCAAT-TC 118423 | || ||||| |||| || ||||| || |||||| | |||| | |||| || Sbjct 3339 CTTACTAGCAGGCGAGCCCTGGAACGTCTCGTAAGGGCCC---AGCTCCTTGGCAATCTC 3283 Query 118424 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTT 118483 | || ||| | | || | || || || || |||||| |||| | Sbjct 3282 CATGGACGTCTCCATTGACGCATAGTAGATGGTCTCGAAAATGTTCTTGTTCAGCTCGCG 3223 Query 118484 GGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGG 118541 |||| ||| || |||||| ||| || | || || | || || ||||| || Sbjct 3222 AGCCTGTTCGCTTTCGAACGCGTAGTT--CATGAGGATGAAAGCGTCGGCCAGACCCTGA 3165 Query 118542 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG---GGA 118598 ||||| | || | ||||| || | ||| || ||||| ||||| ||||||| || Sbjct 3164 ACACCAATACCCACAGGGCGGTGGCGCATGTTGGACTTGCGAGC---CTCCACGACTGGG 3108 Query 118599 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 118658 ||| | || | ||||| ||| | || ||||| ||| || ||||| || | || | Sbjct 3107 TAATAGTTGATGTCGATCACCTTGTTGAGATTACGGGTCACCACCTTAGTCACGTCGTAG 3048 Query 118659 AGCTTTTCGTAATC-AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 118717 ||||| | ||| | |||||| || || | || | ||||| || || | || Sbjct 3047 AGCTTCTGGTAGTTGAAAACTCCG-------TCCTCCACGAATTTAGGCAGTGCTACGGA 2995 Query 118718 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAA 118777 ||||| || ||||| | ||||||| |||||||| || | || |||||| Sbjct 2994 CGCCAAGTTGCACACCGCCACCTCATCCGGCGACGTGTACTCCATCACCTCGCAGCACAA 2935 Query 118778 GTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 118835 ||| || | || |||||||| |||| || || ||||| ||| ||| ||| Sbjct 2934 GTTACTGGAGCGG--ATCGTGCCCAAATTCTGCTGGTTGGACTTGCGGTTGGCCGCGTCC 2877 Query 118836 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACA 118895 ||||| |||||| | ||| |||||||| | || | | | || | ||| | Sbjct 2876 TTGTACAGCATGAAGGGCACACCCGTCTCAATCTGCGCGTCCAAGATCGAGAACCACA-- 2819 Query 118896 TCGGCAGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCTTCCTCGTACTTTGTGTAGA 118950 || |||| ||| | | | ||| || || ||||| | ||||||||| ||||| Sbjct 2818 ---GCTGCTGTGCATTGATCGTCTTGCGCGCACGTCCCTCCTTCTCGTACTTCTCGTAGA 2762 Query 118951 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 119010 | | ||||||||| || ||| | ||| |||| || || || | || || ||||| | Sbjct 2761 GAGTTTCAAACTCGTCTCCCCAGCACTCGTAGAGGCCAGGAGCTTCATTGGGACAGAACA 2702 Query 119011 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070 | ||| | ||| | || || || |||||||| || || |||| ||| || || Sbjct 2701 AACTCCACTTGCCATTGGCTTCCACGCGTTTCATGAACAGATCAGGGACCCACAGAGCGT 2642 Query 119071 AGAAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 119129 |||| | || ||| || | || || | | || || || ||| | ||||| || Sbjct 2641 AGAACAAGTCACGAGCACGGTGCAACT-CGTTGCCGTGGTTCTTACGTAGGTCCAAGAAC 2583 Query 119130 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGA 119186 || | || || || |||||||| |||| ||| | |||| || || ||||| | Sbjct 2582 TCGAAGACGTCAGCATGCCACGGCTCCAAGTAGATAGCGAACGATCCTTTACGTTTGCCT 2523 Query 119187 CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCA 119246 || |||||| || |||| || ||| ||||||| || || |||||||| ||||| ||| Sbjct 2522 CCGCCCTGGTCCACGTACCGAGCCGTGTCGTTAAACACCCGCAGCATTGGGATGATGCCA 2463 Query 119247 TCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGC 119306 | ||| ||| || || || || || | ||| |||||| || | ||| || Sbjct 2462 TTGGACGAGCCGTTCGTGCCTCGGATGTAACTGTTAGTGGCTCGGATGTTGTGCATACTG 2403 Query 119307 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 119366 || ||||||||||| ||||| || ||||| ||| |||| | | ||| || ||||||| Sbjct 2402 ATGCCAATACCCCCAGCCCATTTGGAGATGCACGCACACTGCTTCAGAGTGTCGTAGATG 2343 Query 119367 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGT 119426 || || || ||||| ||| | || | | |||||| |||| ||||| | || Sbjct 2342 CCCTCAATGGAGTCGTCCTGCATGGCCAGCAAGAAGCACGAGGACAGCTGAGGACGCGGA 2283 Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTC 119485 || |||||||||||||| || || || || || |||| | || | || |||||| || Sbjct 2282 GTGCCAGCGTTGAAGAGCGTGGGAGTGGCATGCGTGAAGA-ACTTCTGCGACATCAACTC 2224 Query 119486 GTAGGTCTCCA 119496 ||| ||||||| Sbjct 2223 GTACGTCTCCA 2213 >seq21 Length=112267 Score = 140 bits (154), Expect = 4e-28 Identities = 306/450 (68%), Gaps = 20/450 (4%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||| ||||| ||||| || | | ||| | ||||| Sbjct 22355 TACTCGCCCACACGCTTCTCGAAAAAGTTGGTCTTGCCCTGGAGAGAGATCATGTCCATC 22296 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || || |||||||| || | || | ||| || | | || ||||| Sbjct 22295 CAGTCGAACGGGTTCTTGACGTGGTAGATCTTGGACACACCCAGTGAGTACAGCAGACGG 22236 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||| ||||||| |||| | |||||||| ||||| || | ||| Sbjct 22235 TCAGCCACGAACTCGATGTACTGGCACATGAGGCCCGAGTTCATGCCGATCAGCTCCACA 22176 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| | | ||| | | |||||| |||| || || |||||||| | || Sbjct 22175 -GGGAGCGAGTCACACACAAACTCGTGCTCAATCACCACCGCGTCACGCACGATCTCATG 22117 Query 129967 AAT---GGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CACGGC 130017 | | |||||| ||| | | ||| || |||| |||| | || ||| Sbjct 22116 CACACGGCTCTCCGG--CAGTT-TGTTGACCAG---CTTG--GAGTACATGAGGCA-GGC 22066 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 || ||| ||| | ||||| |||||| ||| || || |||||||||| ||||| || Sbjct 22065 GAAGTCCGTGTGCATGCCCTCATCACGGCTGATCAGCTCGTTCGAGAAGCTGAGACCAGG 22006 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 |||||| || |||||||| | |||||| || | || || ||||| ||||||||||| || Sbjct 22005 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCC 21946 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTC 130167 |||||| | |||||||| | |||||||| Sbjct 21945 CTCCACCGAGGCGAACGCCAGCAGACGCTC 21916 >seq30 Length=241204 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 179920 AGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCG 179979 ||||||||||| || ||||| || ||||| || ||||||||||| || || ||| Sbjct 58151 AGTTGCGCCACAGATGCATCGCGCACATTGAGGAGTTTACCACGGAGAGGAAAAACGCCG 58092 Query 179980 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 180039 || || ||||| ||||| || | |||||||| || || || | ||| || |||||||| Sbjct 58091 TACTGGTCACGCCCAACAACTGCAAGACCAGCCACAGCCAGTGCCTTGGCTGAATCACCT 58032 Query 180040 TCCGTCACGATGAGCGTACA 180059 || |||| ||| |||| ||| Sbjct 58031 TCAGTCAAGATAAGCGAACA 58012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618401850881840