Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq712 185 3e-41 seq20 95.1 4e-14 seq3797 89.7 2e-12 >seq712 Length=19597 Score = 185 bits (204), Expect = 3e-41 Identities = 933/1474 (63%), Gaps = 22/1474 (1%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || ||||| | ||||| || || || || |||| ||| ||||| || || || || || Sbjct 6436 GGTATCGACCTGGGTACCACGTACTCGTGCGTTGGTGTCTGGCAGAACGACCGCGTGGAG 6377 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || |||||||| ||||| || || | || ||||| || ||||| || || || || || Sbjct 6376 ATCATTGCAAACGATCAGGGAAATCGTACGACGCCGTCGTACGTGGCGTTCACGGACACC 6317 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| ||||||||||| |||| || || |||| || || || | || ||||| Sbjct 6316 GAGCGTCTGATTGGTGATGCTGCCAAGAACCAAGTGGCCATGAACGCACACAACACGGTG 6257 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTGATC 349442 ||||||| ||||| | || || | | || |||| || | | || || || Sbjct 6256 TTTGATGTCAAGCGTTTGATCGGACGCAAGTTCACTGATCCAGAAGT--GCAGTCGGACA 6199 Query 349443 TAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTG-ATAAACCAATTATTGAGGTT 349501 | || || | ||||| | | || || ||| | ||||||| | | ||| Sbjct 6198 TCAAGCACTGGCCTTTCAAAG-TGGCCCGTGGTCCGGAGAATAAACCTCAAGTGGTGGTG 6140 Query 349502 GAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGT 349560 | || || || || | || || || ||||| || || || || ||||| | | Sbjct 6139 CAGTACAAGGGCGAGTCGAAGAC-GTTCCAGCCCGAGGAGATCTCGTCCATGGTGCTGAT 6081 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620 || ||| || | || || || | | ||| | || | | || || || || Sbjct 6080 CAAGATGCGCGAGGTGGCCGAGGCCTTCATCGGTAAGGAGGTGAAGAACGCCGTGATCAC 6021 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || || ||||| || || || | |||||| || || || || ||||| |||||| Sbjct 6020 GGTGCCGGCCTACTTCAACGACTCGCAGCGTCAGGCCACCAAGGACGCTGGTGCCATTGC 5961 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | || || || | || || || || || |||||||| || || || || || || Sbjct 5960 TGGCCTGAACGTGCTGCGTATCATCAACGAGCCAACTGCTGCGGCTATCGCCTACGGTCT 5901 Query 349741 TGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800 || || | | | | | || || | |||||||| || | || || || ||||| Sbjct 5900 GGACAAGAAGGGCGGC---GAGCGCAACGTGCTTATTTTCGACCTGGGCGGCGGCACTTT 5844 Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860 || || || || || | |||||||||| || || || || || || || || || || Sbjct 5843 CGACGTGTCGCTGCTGAGCATTGAAGAGGGCATCTTCGAGGTGAAGGCGACGGCGGGCGA 5784 Query 349861 TACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATT 349920 || || || || || ||||| || || || ||||| || | | ||||| || || Sbjct 5783 CACGCACCTGGGAGGTGAAGACTTCGACAACCGTCTTGTCGAGTACTTTGTGGCTGAGTT 5724 Query 349921 TAAGCGTCAAGC----TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAA 349976 ||||| ||||| ||| ||||| | | || | || | || || || Sbjct 5723 CAAGCG-CAAGCACCGTAA---GGATATGACGGCGAGTCAGCGTGCTCTACGACGTCTTC 5668 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 | || ||||| || || || ||||| | || || || | | || | | ||||| | Sbjct 5667 GTACGGCGTGCGAGCGCGCCAAGCGAACTTTGTCCACTTCAGCGCAGGCGTACATTGAGA 5608 Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 ||||| | || || ||| || ||| || ||||||| ||||| |||||||| | Sbjct 5607 TTGATACGCTGTACGACGGCGTGGACTTCAACTCGACTATTACCCGTGCGCGGTTTGAGG 5548 Query 350097 AATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATG 350156 | ||||| || | ||| | || ||||| ||||| |||| | || Sbjct 5547 ATCTATGTGGAGAGTTCTTTCGCAAGACGATGGAGCCTGTCTCGCAAGTCCTGCGTGACT 5488 Query 350157 CAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTC 350216 | ||| | || || || ||| | | || || || | || || || || || || || | Sbjct 5487 CCAAACTATCAAAGAACCAGGTGAACGAGGTTGTGCTGGTGGGCGGCTCGACTCGAATCC 5428 Query 350217 CAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTA 350276 | || || || ||| | || || || || || || ||||| || || | || || | Sbjct 5427 CGAAGGTGCAGCAGCTGCTGTCAGACTTCTTCAACGGCAAGGAGCCCAACAAGTCGATCA 5368 Query 350277 ATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATA 350336 | || || || ||||| || ||||| || | || || || | |||||| ||| || Sbjct 5367 ACCCGGACGAGGCTGTGGCGTATGGCGCCACCGTCCAAGCTGCGATTTTAGGTGGCAACG 5308 Query 350337 AGAGTTCT--AAAATTG-ATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGAT 350393 | ||| || ||| | ||| || | ||||| |||||| | || | ||||||||| Sbjct 5307 GGTCATCTTCCAAGTTGCAGGATTTACTGCTACTGGATGTAGCCCCGTTGTCGCTTGGAC 5248 Query 350394 TAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAA 350453 | || ||| | |||| ||| ||||| || ||||| | || | ||| || ||| | | Sbjct 5247 TGGAGACTGCCGGTGGAGTCATGACCAAGCTCATTCCACGCAACACTACGGTTCCTGCGA 5188 Query 350454 AAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTAT 350513 | ||| | || | || || || | || || || || | | || || || || | Sbjct 5187 AGAAGACACAGTCGTTCTCGACGTACGCCGACAACCAATCCGGAGTGTTGATCCAGGTGT 5128 Query 350514 TTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTG 350573 |||| || ||||| | || | ||||| || || || | |||| ||| | Sbjct 5127 TTGAGGGCGAACGCACGATGACGCACGATAACCATCTTCTGGGCAAGTTTAACCTGGACG 5068 Query 350574 AAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAA 350633 || || || ||||| | || || ||||| ||||| || | || ||| | || | Sbjct 5067 GCATCCCGCCCATGCCGCGTGGTGTGCCTCAAATTGACGTGACGTTTGATGTCGACGTCA 5008 Query 350634 ATGGTATTTTAAATGTTACCGCAGTTGAAAAATC 350667 |||| ||||| || || | || || || || || Sbjct 5007 ATGGCATTTTGAACGTGTCGGCTGTAGAGAAGTC 4974 >seq20 Length=122154 Score = 95.1 bits (104), Expect = 4e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 235883 AATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGG 235942 ||||| |||||||||| |||| ||||||| ||||||||| ||||||||||||||| ||| Sbjct 5130 AATATCCGGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGG 5189 Query 235943 ATCAAAACCCAGCATCTCCA 235962 ||| | |||| || |||||| Sbjct 5190 ATCGATACCCTGCTTCTCCA 5209 >seq3797 Length=1243 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 516 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 457 Query 74548 TCGGGCA 74554 ||||||| Sbjct 456 TCGGGCA 450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515170647154142