Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq608 237 2e-57 seq30 138 1e-27 seq173 114 1e-20 seq69 113 5e-20 >seq608 Length=23317 Score = 237 bits (262), Expect = 2e-57 Identities = 343/473 (73%), Gaps = 12/473 (3%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||||| || ||| || |||| ||| ||||| ||||| || || || |||||| Sbjct 2215 GAGACGTACGAGTTGATGTCGCAGAAGTTCTTCACGCATGCCACTCCCACGCTCTTCAAC 2274 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 ||||| || | |||||| |||| |||||| || |||| ||| |||| ||||| Sbjct 2275 GCTGGCACTCCGCGTCCTCAGCTGTCCTCGTGCTTCTTGCTGGCCATGCAGGACGACTCC 2334 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || ||||||||||| || || ||| ||||||| ||||||||| ||| | || ||| Sbjct 2335 ATTGAGGGCATCTACGACACTCTGAAGCAGTGTGCGTGCATCTCCAAATGGGCTGGGGGT 2394 Query 53423 ATCGGTATC-CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 || || ||| ||| | ||| |||| || | || ||| || |||||||| Sbjct 2395 ATTGGCATCAGTATGCAC-AACATCCGAGCCACTAACAGTTACATCCGAGGCACGAACGG 2453 Query 53482 CGTCG-CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | ||| || |||| ||| | || ||||| || || || ||| ||||||| |||||||| Sbjct 2454 C-TCGTCCAATGGCATCATCCCAATGCTGCGGGTGTTTAACGACACGGCTCGGTACGTGG 2512 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 ||||||| || || || || || || |||||||| |||||| | ||||||||||| || | Sbjct 2513 ACCAGGGCGGAGGCAAACGTAAAGGATCGTTCGCTATCTACTTGGAGCCGTGGCATGCTG 2572 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC--TGC-C 53657 || | | ||||| | || || ||| ||| || || | | ||| ||| | ||| | Sbjct 2573 ACGTCTTCGAGTTCTTGGACCTACGTAAGAACCACGG---CAACGAGTTGCACCGTGCTC 2629 Query 53658 GTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGA 53709 ||||| |||| ||| ||||||||| | || || || |||||| || ||||| Sbjct 2630 GTGACTTGTTCTAC-GCTCTGTGGGTCCCTGATCTGTTCATGAAACGCGTGGA 2681 Score = 165 bits (182), Expect = 9e-36 Identities = 551/842 (65%), Gaps = 39/842 (5%) Strand=Plus/Plus Query 55106 AAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAAT 55165 ||||| |||| ||||| || ||||| || || || ||| ||| ||||||| || Sbjct 3043 AAGCTCTACGACGTGACTAAGGTGGTGACCCGTAATCTCAACAAGGTGATCGACATCAAC 3102 Query 55166 TACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGT 55225 || ||||| | | ||| |||||||||||| | || ||||| || | | || ||| Sbjct 3103 TATTACCCAGTCGTGGAGGCTCGCAAGTCCAACATGCGCCACCGCCCTGTGGGTATTGGT 3162 Query 55226 GTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCC-TTCGACTCGGAACCTGC 55284 || ||||| |||||||| ||||| | | | | | | | ||||| |||| || Sbjct 3163 GTTCAGGGTCTGGCCGACGCTTTCATCCTCAT-GAACTACGCGTTCGAAAGCGAACAGGC 3221 Query 55285 TCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCG- 55342 ||| || | ||| || |||| ||| || | |||||||| ||| | | ||| ||| Sbjct 3222 TCGCGAGCTGAACAAGAACATTTTCGAGAC-CATCTACTATGCGTCAATGGAGACGTCCA 3280 Query 55343 TGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGCTGACAAG 55402 || || | | |||| ||| | ||||||||||||| | ||||| ||| ||| Sbjct 3281 TGGAGATTGCCAAGGAGCT-GGGCCCTTACGAGACGTTCCAGGGCTCGCCTGCTAGTAAG 3339 Query 55403 GGACTTCTCCAGTTCGATCTATGGGGCAAGTCTGACCCCAT-GTTTGACAAGT------- 55454 || | |||||||||| | |||||| |||| |||| | || | | || Sbjct 3340 GGTATCTTCCAGTTCGACATGTGGGGC--GTCT--CCCCGTCGTCCGGCCTGTGGAACTG 3395 Query 55455 --------TGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCC 55506 ||||| | || || | || | || ||||| || || ||||| || Sbjct 3396 GGCTGCGCTGAAGGAGAACGTTATCAAACACGGTATCCGTAACTCGCTACTGGTGGCCCC 3455 Query 55507 AATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACAC 55566 ||||| || || ||||| || |||||| |||||||||| ||| | ||||||| ||||| Sbjct 3456 CATGCCTACGGCTTCGACTGCGCAGATCCTGGGCAACAATGAGTCCATCGAGCCCTACAC 3515 Query 55567 GACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATC---AACAAGCA 55623 | ||||| ||| ||||| || || |||||||| || |||| |||||| | Sbjct 3516 ATCGAACATGTACAACCGCCGTGTGCTTGCTGGTGAGTT---CACGATCGTGAACAAGTA 3572 Query 55624 CCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAA-CCCGCAGATCAAGACG-GATATT 55681 ||| | ||||| ||| || | || |||| |||| | || || ||| | Sbjct 3573 CCTAATGAAGGAGCTGATCGAGCTGGGCATCTGGACGCCCGAGGTTCGCAACCAGATCCT 3632 Query 55682 GTGCGGAACGGGGGGTCCGTCCAGAATCTGGAGAT--TCCTCTGCGTC-TCAAGGAGATT 55738 | || |||| ||||| || ||||| | || | ||| | | | ||||| | Sbjct 3633 GAACG--ACGGTGGGTCTGTGCAGAAGGTCAAGGTCATCCCGGACAACGTAAAGGACAAG 3690 Query 55739 TACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGT 55798 ||| ||||||||||||||| |||||| || | || || || || ||||| Sbjct 3691 TACAAGACGGTGTGGGAGATCAAGCAGAAGTCGGTGCTGGATCTGTCAGCCGACCGTGGC 3750 Query 55799 GCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAG 55858 || |||||| |||| ||||| || |||||| || | | || | | |||| Sbjct 3751 GCTTACATCTGCCAGAGTCAGTCGCTCAACATCCATATTGCCGACCCGACGATCAGCAAG 3810 Query 55859 TTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTG 55918 | | || |||||||| |||| ||||||||||||||||||||||| |||||||| || Sbjct 3811 CTCACATCCATGCACTTCTACGCTTGGAAGAAGGGACTCAAGACGGGCATGTACTACATG 3870 Query 55919 CG 55920 || Sbjct 3871 CG 3872 >seq30 Length=241204 Score = 138 bits (152), Expect = 1e-27 Identities = 195/274 (71%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 152027 GCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 |||| ||||| || || | || || ||||||||||| ||| ||||| || || |||| Sbjct 59077 GCGTAAAGATATACCGAGGACTAGCAGCATCCTTGCCTCCTTGCAGCCTGGTACCGAACT 59018 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || || || | | || |||||||||| || ||||| | ||| |||| || | Sbjct 59017 GGCCTGATGGATACAACAGCGGAAGGTTGTTGGAACCAACGAAGTCCTGCGCCATGTTAA 58958 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 ||||||| |||| ||||||||||||||||| || || ||||| | ||| | Sbjct 58957 CAATCGTCGAATGCAACGAAGCTTCACCGTGGTGATAAGCTGTGTGCTCACTGCAGTAAC 58898 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 |||| | |||||||||||||| || | ||||| | ||| ||||||||| ||| || Sbjct 58897 CCGCGAGCTGCGCCACCTTCACCTCGCTAGTCAGCCTGCGCTTCAGACAGGCGAAAAGCA 58838 Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 |||| ||||| || || | ||| || ||||| Sbjct 58837 CCTTCCGCTGCGAAATCTTAAGACCATCGACCAC 58804 Score = 116 bits (128), Expect = 4e-21 Identities = 292/437 (67%), Gaps = 19/437 (4%) Strand=Plus/Minus Query 117149 AACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAG 117208 ||||| || |||||||| || |||||||||| || | |||||| | || ||||||||| Sbjct 59230 AACCC-GTACCGATACCTTCCGCACCATTCACGAGCAGCATCGGGATGATAGGAACGTAA 59172 Query 117209 AACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCA--C 117266 || | ||||| || | | || ||||| | |||| ||||| |||| || | Sbjct 59171 TACACGGGCTCAACTGGGAATCCATCGTCGTCGGCGTAGCGGAGCAAAGCATCATCTTCC 59112 Query 117267 TC-GGATCGAATATGTTCTTGGTCCACGGTGCT-----AGGCGAGTGAAAATGTAACGAG 117320 || ||| |||| ||| ||||| || | || || || || |||| Sbjct 59111 TCAGGA---AATACCAAGCGGGT-----GTGCTTCTGAAGCAGCGTAAAGATATACCGAG 59060 Query 117321 AGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGA 117380 || |||||||||||||| || || | |||||||| || || || | ||| | Sbjct 59059 GACTAGCAGCATCCTTGCCTCCTTGCAGCCTGGTACCGAACTGGCCTGATGGATACAACA 59000 Query 117381 GGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGC 117440 | |||||||||| || || |||| || |||| ||| |||||||| || | Sbjct 58999 GCGGAAGGTTGTTGGAACCAACGAAGTCCTGCGCCATGTTAACAATCGTCGAATGCAACG 58940 Query 117441 TCGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCCCGCCAGCTGAGCCACC 117499 || ||||| |||||||| || || ||||| | || ||| ||||| ||||| |||||| Sbjct 58939 AAGCTTCACCGTGGTGATAAGCTGTGTGCTCACTGCA-GTAACCCGCGAGCTGCGCCACC 58881 Query 117500 TTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGC 117559 |||| || ||||| | ||| || ||||| ||| |||||| ||||| | Sbjct 58880 TTCACCTCGCTAGTCAGCCTGCGCTTCAGACAGGCGAAAAGCACCTTCCGCTGCGAAATC 58821 Query 117560 TTCAGACCATCCGCCAC 117576 || |||||||| |||| Sbjct 58820 TTAAGACCATCGACCAC 58804 >seq173 Length=52550 Score = 114 bits (126), Expect = 1e-20 Identities = 240/358 (67%), Gaps = 0/358 (0%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||| || || |||||||| || | ||| || | ||| || ||| || Sbjct 32879 CCCGTTCCGATACCGTCACTGCCGTTGACGAGCACCATGGGGAAAATCGGAATGTACCAC 32938 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || ||||| | | || ||||| || || || || | || |||||| ||| Sbjct 32939 TCTGGCTCGATCGACTGGCCGTCTTCATCCAAATACTTGAGCACATCATTGTCCAGAGGA 32998 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 ||| | || || || || | | ||| ||||| ||||| || | ||||||||| Sbjct 32999 TCGTAGATTCGACGCGTGAGTTGCTCCAAGTTGGTGAAAATGTAACGAGCACTGGCCGCA 33058 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 |||||||| || || ||||| || ||||| || ||| || |||| || |||| Sbjct 33059 TCCTTGCCGCCCATCAAACGCGTACCGAACTGACCGATAGGCGATAGAAGGTGGATGTTG 33118 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 ||| || || |||| ||| |||| |||||| || |||||||| || ||| ||| Sbjct 33119 TTGCTTCCGACAAAATCCTGTGCCATATTCACGATACAGCCCTGCAAGCTTTGTTCGCCG 33178 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCG 152233 ||||| || || | ||||| | | ||| || |||| ||| |||||||| | |||| Sbjct 33179 TGGTGGTATGCAGAATGCTCGGACACGTAACCAGCCAGCTGTGCCACCTTGAGCTCCG 33236 Score = 104 bits (114), Expect = 3e-17 Identities = 240/356 (67%), Gaps = 7/356 (2%) Strand=Plus/Plus Query 117149 AACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAG 117208 ||||| ||||||||||| || || || | || | ||| || | | |||| ||| Sbjct 32877 AACCC-GTTCCGATACCGTCACTGCCGTTGACGAGCACCATGGGGAAAATCGGAATGTAC 32935 Query 117209 AACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTC 117268 |||| ||||| | | | | ||||| || | ||||||||||| ||||||| Sbjct 32936 CACTCTGGCTCGATCGACTGGCCGTCTTCATCCAAATACTTGAGCACATCATTGTCCAGA 32995 Query 117269 GGATCGAATATGTTCTTGGTCCACGGTGCT--AGGCGAGTGAAAATGTAACGAGAGCTTG 117326 |||||| | || || | | |||| | | |||||||||||||||| || | Sbjct 32996 GGATCGTAGAT--TCGACGCGTGAGTTGCTCCAAGTTGGTGAAAATGTAACGAGCACTGG 33053 Query 117327 CAGCATCCTTGCC-ACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385 | ||||||||||| ||| ||| |||||||||||| || || | ||| | |||| Sbjct 33054 CCGCATCCTTGCCGCCCATCAA-ACGCGTACCGAACTGACCGATAGGCGATAGAAGGTGG 33112 Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445 | ||||||| || ||||| | || |||| || || || || || | ||| Sbjct 33113 ATGTTGTTGCTTCCGACAAAATCCTGTGCCATATTCACGATACAGCCCTGCAAGCTTTGT 33172 Query 117446 TCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTT 117501 || || ||||| || || | ||||| | |||||| || |||||||| |||||||| Sbjct 33173 TCGCCGTGGTGGTATGCAGAATGCTCGGACACGTAACCAGCCAGCTGTGCCACCTT 33228 >seq69 Length=76656 Score = 113 bits (124), Expect = 5e-20 Identities = 249/363 (69%), Gaps = 9/363 (2%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 ||| | ||| | ||||||||| | ||||| ||| || || ||| ||| |||||||| Sbjct 60145 CGCGAGCTCTACAAACTCACGCACACTGTGGCACTCTCCAGTCGCAACCACAAAATCTTC 60204 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 ||| | ||||| | ||| |||||||| || |||||||| |||||| ||||| Sbjct 60205 CGGAGTGTCGTGCTGTAGCATCCGCCACATGCATTCCACGTAGTCGCGTGCGTGGCCCCA 60264 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCTTGGC-CGTCTTGTTCCACTCCG 124659 ||||||||||||||||| ||| || | || ||| | || | | | | || Sbjct 60265 GTCGCGCTTGGCATCCAAGTTGCCCACGAAGAGGCACTTCTCGATTCCAGCACGAATGCG 60324 Query 124660 --CCAAACCCAGTGTAATCTTGCGCGTCAC-AAACTCGGAACCGCGTCGCTCAGACTCGT 124716 ||| | | | || ||||| || || || ||| | || ||||| ||| | ||||| Sbjct 60325 CACCACAGCGCGCGTGATCTTTCGAGTGACGAAAGTTGG-TCCGCGCCGCGGACTCTCGT 60383 Query 124717 GGTTGAACAGAATGCCAGTACA-CGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTC 124775 ||||||||| ||| || || || ||| ||||||||||| | ||||| | | || || | Sbjct 60384 GGTTGAACAAAAT-CCCGTTCACCGCGAACATCCCGTAGGCTTCGCGAT-GGTTCACGAC 60441 Query 124776 -ATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTT 124834 ||||| | | || |||| | | |||||||| || |||| ||| |||||||| Sbjct 60442 GCTCCAAAAGGCGAACTGCTTTGCTATCCCATAGGGTGAACGAGGGTGGAACGGGGTGTT 60501 Query 124835 TTC 124837 || Sbjct 60502 CTC 60504 Score = 105 bits (116), Expect = 7e-18 Identities = 185/263 (70%), Gaps = 15/263 (6%) Strand=Plus/Plus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002 |||||| || | ||||| |||||||||||||| |||||| || || ||| | || Sbjct 60157 AAACTCACGCACACTGTGGCACTCTCCAGTCGCAACCACAAAATCTTCCGGAGTGTCGTG 60216 Query 159003 TTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGC 159062 || ||||| |||||||| || ||||| || | ||||| ||||||||||||||||| Sbjct 60217 CTGTAGCATCCGCCACATGCATTCCACGTAGTCGCGTGCGTGGCCCCAGTCGCGCTTGGC 60276 Query 159063 ATCCATGTTCCCGAGCTCGATG-ACTT-----TTCCAG-ACTTTTTCCACTCAGCCAGAC 159115 ||||| ||| || | || | |||| |||||| || | | || ||| | Sbjct 60277 ATCCAAGTTGCCCACGAAGAGGCACTTCTCGATTCCAGCACGAAT---GCGCA-CCACAG 60332 Query 159116 CGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGA--CTCATGGTTAAA 159173 || |||||||||| || || || || || ||||||||| | || ||| ||||| || Sbjct 60333 CGCGCGTGATCTTTCGAGTGACGAAAGTTGGTCCGCGCCG--CGGACTCTCGTGGTTGAA 60390 Query 159174 CAGAATGCCGGTACAAGCGAACA 159196 || ||| ||| | ||||||| Sbjct 60391 CAAAATCCCGTTCACCGCGAACA 60413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547186491377200