Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq46 178 1e-39 seq86 84.2 2e-11 >seq46 Length=92734 Score = 178 bits (196), Expect = 1e-39 Identities = 455/676 (67%), Gaps = 19/676 (3%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| || || ||||||| | || || || || ||||| || | | || Sbjct 3657 AGCTGTTTCTGAAGTGGCTCCACGTGGTTGAGATACACATGTGCGTCACCGATGACATGA 3716 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 |||||||| || |||| || || | || || || |||| ||| || || | |||| Sbjct 3717 ACAAACTCGCCAGGTTTCAGTCCTGCCACCTGCGCTATCAATCGCGTTAGCAGCGCGTAG 3776 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 ||||||||||| || ||||| ||||| |||||||| |||| | |||||| | ||| ||| Sbjct 3777 CTGGCGATGTTGAATGGTACGCCGAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAC 3836 Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103 || | ||| ||||| |||||| ||||| || | ||||||||| || || ||||| Sbjct 3837 GACAACTCACCGTCTGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGCAGCGCCATT 3896 Query 30104 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT-GTT 30162 | || ||||||||| || ||| | || || | ||| ||||| || Sbjct 3897 TCATTGAGATCAGCGGGGTTCCACGCCGACAGCACAATCCGGCGGTCAGTGGGGTTCGTA 3956 Query 30163 C-CTG-ATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGC 30219 | | | || | ||| | ||| ||||| ||||| || || | ||||| || Sbjct 3957 CGCAGCTTGTGAATCAC----CTCTGCGAGCTGGTCCACGCCTTGGCCAGTATAGTCCGC 4012 Query 30220 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30279 ||||| |||||| | || || ||||| | ||| ||||| || || |||||||| || Sbjct 4013 ATGCATGTTCGTGTATTTGGCACCAAAATGGCGCCATTGGAAACCATAGACCGGTCCAAG 4072 Query 30280 GTCTCCCTCTTCCCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30338 ||||| | |||| ||| || || || || |||||| | || | || || ||| Sbjct 4073 ATCTCCTACCTCCC-GTGACTGCAATCCTCTACTGTCCAGGTACTCACGCGATCCATTGC 4131 Query 30339 CGTCCCAGATCTTTACCCCCTTCT-CAGAGAGC-TCTTTGGAGTTTGTGGACCCTCTGAC 30396 |||||||||| | | |||||| | || ||| | | || | | ||| || || | Sbjct 4132 CGTCCCAGATATGAATATCCTTCTGCTGA-AGCGTGTGTGCA-CTCGTGTCGCCACTAAT 4189 Query 30397 GAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAGGG 30455 ||||||||||||||||||| | || | ||| || |||||||| ||||| || | || Sbjct 4190 GAACCACAGCAGCTCCTCCGCCACACCTCGCCAGAATACCCTCTTAGTCGTCAGCAACGG 4249 Query 30456 GAA---ACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCG 30512 ||| | ||| || | || | | || ||||| ||||| || |||| |||| Sbjct 4250 GAATACATTGTTCC-TCAGACTAAATCTCATCTGAGCCCCAAAAACCGACAGCGTCCCCG 4308 Query 30513 TGCCCGTCCTGTCTCC 30528 | ||||| | |||||| Sbjct 4309 TTCCCGTTCGGTCTCC 4324 >seq86 Length=68935 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/246 (67%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 49034 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 49093 |||||||||| | | || ||||| | |||| || | |||||| || | | ||| Sbjct 19465 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCCAGGATGAGCTGTGCCACTCGGTC 19524 Query 49094 GCCCCTCTCGACCCGAAAGGGGTCGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 49153 || | || ||| | ||| ||| | ||| ||||| || ||||| | |||||| Sbjct 19525 CCCACGCTTGACGGGGAAGTCTTCGGGCGAGTGGTTGAACAGGATCACGCCAACGTTGCC 19584 Query 49154 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 49213 | |||||||| ||| | || ||||| || ||| || || || ||||| |||||||| Sbjct 19585 GCGGTAGTCGGCGTCGATGACACCGGCGCCAGTGTCGATGAACTTCTTCAGTGCCAGGCC 19644 Query 49214 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCCAGGTCCGTCTT 49273 || | || ||||| | | ||||| ||| ||||| | | ||||||||||||| Sbjct 19645 AGAGCGAGGCGCCACGCGGGCGTAGCAGCCGTCGGGCACAGCGATGACCAGGTCCGTCTT 19704 Query 49274 TACCAG 49279 || || Sbjct 19705 GACGAG 19710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406289037468888