Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq837 172 5e-38 seq322 129 5e-25 >seq837 Length=16651 Score = 172 bits (190), Expect = 5e-38 Identities = 179/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||||||||||||| | || || || || ||||| ||||| Sbjct 6252 CATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTC 6311 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | || || || ||||| || ||||| |||||||| || ||||| || Sbjct 6312 GGACTCGATCGACAACGTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCA 6371 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACA 27165 ||||| ||||| | ||||||||| || |||| ||| | ||| |||| || |||| Sbjct 6372 GCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGAC-GGTCGTACGTTGAGTGACTACA 6430 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || ||||||||||| | || |||| ||||| |||| |||||||| Sbjct 6431 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGCAT 6482 Score = 170 bits (188), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||||||||||||| | || || || || ||||| ||||| Sbjct 6025 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 6084 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || ||||| || ||||| |||||||| || ||||| || Sbjct 6085 GACTCGATCGACAACGTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCAG 6144 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 ||||| ||||| | ||||||||| || |||| ||| | ||| |||| || ||||| Sbjct 6145 CAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGAC-GGTCGTACGTTGAGTGACTACAA 6203 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||||||||| | || |||| ||||| |||| |||||||| Sbjct 6204 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGCAT 6254 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||||||||||||| | || || || || ||||| ||||| Sbjct 6480 CATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTC 6539 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | || || || ||||| || ||||| |||||||| || ||||| || Sbjct 6540 GGACTCGATCGACAACGTGAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCCGACCA 6599 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACA 27165 ||||| ||||| | ||||||||| || |||| ||| | ||| |||| || |||| Sbjct 6600 GCAGCGATTAATCTTCGCCGGCAAGCAGCTGGAGGAC-GGTCGTACGTTGAGTGACTACA 6658 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||| || ||||||||||| | || |||| ||||| |||| ||||| Sbjct 6659 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGG 6707 >seq322 Length=35284 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || |||| |||||| | || || ||||| ||||| || Sbjct 20086 CGGCATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCC 20027 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||| |||||||| || | || || || || |||||||| || |||||||| || || || Sbjct 20026 GTCGGACTCGATCGACAACGTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGA 19967 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || || || | || | ||| ||||| || |||| ||| | || | ||| || Sbjct 19966 CCAGCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTA 19907 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| || ||||||||||| | ||| |||| ||||| | || || || Sbjct 19906 CAACATCCAGAAGGAGTCGACGCTGCATCTGGTGCTGCGTCTTCGCGGCGG 19856 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || |||| |||||| | || || ||||| ||||| || Sbjct 20314 CGGCATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCC 20255 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||| |||||||| || | || || || || |||||||| || |||||||| || || || Sbjct 20254 GTCGGACTCGATCGACAACGTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGA 20195 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || || || | || | ||| ||||| || |||| ||| | || | ||| || Sbjct 20194 CCAGCAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTA 20135 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || ||||||||||| | || |||| |||| |||| || ||||| Sbjct 20134 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGCAT 20081 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || ||||| ||||| ||||| Sbjct 20538 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCACGCTTGACGTGGAGCCGTCG 20479 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || || |||||||| || |||||||| || || || || Sbjct 20478 GACTCGATCGACAACGTGAAGCAGAAGATTCAAGATAAGGAAGGCATCCCGCCTGACCAG 20419 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | ||| ||||| || |||| ||| | || | ||| |||||| Sbjct 20418 CAACGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAAC 20359 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || |||| |||| |||| || ||||| Sbjct 20358 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGTGGCGGCAT 20309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434894947025280