Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_028785.1 Length=72790 Score E Sequences producing significant alignments: (Bits) Value seq924 152 2e-32 >seq924 Length=20493 Score = 152 bits (168), Expect = 2e-32 Identities = 394/597 (66%), Gaps = 20/597 (3%) Strand=Plus/Minus Query 64121 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 64180 ||||||||||| ||||||||||| || || || ||| | || ||| ||| | | Sbjct 8552 CGGGTGGTGGAGATCTACGGCCCCGAGAGCTCTGGCAAGACGACGCTGGCTCT----GAG 8497 Query 64181 GTG----GCCAATGCGCAGAAGGCCG---GTGGCAACGCCGCCTACATCGACGCTGAGCA 64233 || || | ||||||||| ||| |||| |||| ||||||||| ||||| Sbjct 8496 TTGCATTGCTCAGGCGCAGAAGACCGAGGGTGGAGTATGTGCCTTCATCGACGCGGAGCA 8437 Query 64234 CTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGT 64293 | || | || | | ||||||||||| || || || ||| ||||| ||| || Sbjct 8436 CGCCATTGATGCGCACTACGCCAAGGCTCTGGGAGTCGACATCGACGCCCTGTACGTCTC 8377 Query 64294 TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA 64353 ||||||||| | || || | || |||||||||| |||| ||| ||| || || | Sbjct 8376 GCAGCCGGACTCAGGTGAAGAAGCGCTGGAGATCGCTGACACGCTCATCAGATCGGGGGC 8317 Query 64354 GCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGG 64413 || | ||||||| | ||| |||||| || || ||||| || || ||||| || || Sbjct 8316 AGTGGACCTCGTCGTGCTGGACAGTGTGGCTGCACTCGTGCCACGTGCAGAGCTGGAGGG 8257 Query 64414 CGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAA 64473 || || || ||| || | | ||||| ||||| |||||| ||||| ||||||| Sbjct 8256 TGAGATGGGAGACCAGCAGATTGCTCTGCAGGCGCGACTCATGAGTCAGGCGCTGCGCAA 8197 Query 64474 GCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCG 64530 | ||||| | | |||| |||| ||| | | | | | |||||| | || Sbjct 8196 ATTGACCGGGTCGCTGTCCAAATCCAACTGCACCATTA---TTTTCCTGAACCAGATCCG 8140 Query 64531 CGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTT 64590 ||||| | |||| | | || || | |||| || | || |||| ||| || Sbjct 8139 TCAGAAGGTGGGCATCAT---CTTTGGGTCTCCCGAGGTGACGTCCGGTGGCACGGCGTT 8083 Query 64591 GAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGA 64650 | | | |||||| || || || |||| |||| |||| | || ||||| ||||| Sbjct 8082 GCGCTACTACGCGTCGGTGCGGCTGGACATCCGCCGCAAGACGGCCATCAAGGAGGGCGA 8023 Query 64651 TGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 64707 ||| ||||||||| || ||| ||||| | ||||||||||||||| |||| Sbjct 8022 CCAGGTCGTCGGCAACGAGACGGTGGTCAAGGTGGCCAAGAACAAGCTGGCGTCGCC 7966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232790959935254