Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq46 194 2e-44 >seq46 Length=92734 Score = 194 bits (214), Expect = 2e-44 Identities = 413/613 (67%), Gaps = 4/613 (1%) Strand=Plus/Plus Query 6515 CGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGCA 6574 ||| || | |||| ||||| || | || |||| | |||||| || || | ||| || Sbjct 3644 CGGTGCGCGCGTT--AGCTGTTTCTGAAGTGGCTCCACGTGGTTGAGATACACATGTGCG 3701 Query 6575 TCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGTAC 6634 || || | ||| || | ||| ||||| || || | || || || |||| | Sbjct 3702 TCACCGATGACATGAACAAACTCGCCAGGTTTCAGTCCTGCCACCTGCGCTATCAATCGC 3761 Query 6635 GTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGT 6694 || ||||| ||||| || || |||||||| || || || | |||||||| |||| || Sbjct 3762 GTTAGCAGCGCGTAGCTGGCGATGTTGAATGGTACGCCGAGTCCCATGTCGGCCGAGCGC 3821 Query 6695 TGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCAC 6754 || || | |||||| |||| ||| || | || |||||||| ||||||| |||||||| Sbjct 3822 TGGTACATCTGGCACGACAACTCACCGTCTGCCACGTAGAACTGGCAGAACATGTGGCAC 3881 Query 6755 GGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTG 6814 || || |||||||| | |||||| ||||||||||| ||| ||| |||| | | Sbjct 3882 GGCGGCAGCGCCATTTCATTGAGATCAGCGGGGTTCCACGCCGACAGCACAATCCGGCGG 3941 Query 6815 TCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTCCGCTCCCTGTCC 6873 ||| |||||| || ||| ||||| | |||| ||||||||| | || || || Sbjct 3942 TCAGTGGGGTTCGTACGCAGCTTGTGAATCACCT-CTGCGAGCTGGTCCACGCCTTGGCC 4000 Query 6874 CGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTA 6933 | ||||||||| | | | || | || ||||| || | ||| ||||| || || Sbjct 4001 AGTATAGTCCGCATGCATGTTCGTGTATTTGGCACCAAAATGGCGCCATTGGAAACCATA 4060 Query 6934 GACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCG 6993 |||||| || | || || ||||||| || | || || | ||||||| | || || Sbjct 4061 GACCGGTCCAAGATCTCCTACCTCCCGTGACTGCAATCCTCTACTGTCCAGGTACTCACG 4120 Query 6994 AGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGC 7053 || || | |||||||||| | | || | ||| | | ||||| | Sbjct 4121 CGATCCATTGCCGTCCCAGATATGAATATCCTTCTGCTGAAGCGTGTGTGCACTCGTGTC 4180 Query 7054 CCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGT 7113 || || | |||||||||||||||||| |||| || |||| | || | || ||||| Sbjct 4181 GCCACTAATGAACCACAGCAGCTCCTCCGCCACACCTCGCCAGAATACCCTCTTAGTCGT 4240 Query 7114 CAGCAGCGGAAAT 7126 ||||| ||| ||| Sbjct 4241 CAGCAACGGGAAT 4253 Score = 194 bits (214), Expect = 2e-44 Identities = 413/613 (67%), Gaps = 4/613 (1%) Strand=Plus/Minus Query 34219 ATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTG 34278 ||| ||| |||||||||| || | || | |||| || |||| |||||||||||||| Sbjct 4253 ATTCCCGTTGCTGACGACTAAGAGGGTATTCTGGCGAGGTGTGGCGGAGGAGCTGCTGTG 4194 Query 34279 GTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGA 34338 |||| | || || | ||||| | | ||| | || | | |||||||| Sbjct 4193 GTTCATTAGTGGCGACACGAGTGCACACACGCTTCAGCAGAAGGATATTCATATCTGGGA 4134 Query 34339 CGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGA 34398 || | || || || || | ||||||| | || || | || ||||||| || || Sbjct 4133 CGGCAATGGATCGCGTGAGTACCTGGACAGTAGAGGATTGCAGTCACGGGAGGTAGGAGA 4074 Query 34399 CTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGA 34458 | || |||||||| || ||||| ||| | || ||||| || | || | | | Sbjct 4073 TCTTGGACCGGTCTATGGTTTCCAATGGCGCCATTTTGGTGCCAAATACACGAACATGCA 4014 Query 34459 AGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTGAAGC 34517 ||||||||| | || || || | ||||||||| |||| | ||||| ||| || Sbjct 4013 TGCGGACTATACTGGCCAAGGCGTGGACCAGCTCGCAG-AGGTGATTCACAAGCTGCGTA 3955 Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGA 34577 |||||| |||| | |||| ||| ||| ||||||||||| |||||| | | Sbjct 3954 CGAACCCCACTGACCGCCGGATTGTGCTGTCGGCGTGGAACCCCGCTGATCTCAATGAAA 3895 Query 34578 TGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCT 34637 ||||||| || |||||||||| ||||||| |||||||| || | || ||| |||| | Sbjct 3894 TGGCGCTGCCGCCGTGCCACATGTTCTGCCAGTTCTACGTGGCAGACGGTGAGTTGTCGT 3835 Query 34638 GCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTT 34697 ||||| | || || || |||| |||||||| | || || || |||||||| || || | Sbjct 3834 GCCAGATGTACCAGCGCTCGGCCGACATGGGACTCGGCGTACCATTCAACATCGCCAGCT 3775 Query 34698 ACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGC 34757 |||| ||||| ||| |||| || || || | || || ||||| ||| | || | Sbjct 3774 ACGCGCTGCTAACGCGATTGATAGCGCAGGTGGCAGGACTGAAACCTGGCGAGTTTGTTC 3715 Query 34758 ATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGC 34817 || | || || || ||| | || || |||||| | |||| || | || ||||| Sbjct 3714 ATGTCATCGGTGACGCACATGTGTATCTCAACCACGTGGAGCCACTTCAGAAACAGCT-- 3657 Query 34818 AACGAGAGCCCCG 34830 |||| | || ||| Sbjct 3656 AACGCGCGCACCG 3644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448238227450080