Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq322 158 3e-33 seq552 150 4e-31 seq837 149 1e-30 seq422 87.8 4e-12 >seq322 Length=35284 Score = 158 bits (174), Expect = 3e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | || || Sbjct 20327 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCC 20386 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| |||||||| |||||||| || | |||||||| || Sbjct 20387 TCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTATCT 20446 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || |||||||| ||||| | ||| || || || || || ||||||||| Sbjct 20447 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTC 20506 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGTTACTT 211127 || ||||| | ||||| || || | |||||| || | |||| || Sbjct 20507 TTGCCCGTCAACGTCTTCACGAAGATCTGCATCTTCTCGTTAGTT 20551 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | || || Sbjct 20099 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCC 20158 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| |||||||| |||||||| || | |||||||| || Sbjct 20159 TCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCTTCCTTATCT 20218 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || |||||||| ||||| | ||| || || || || || ||||||||| Sbjct 20219 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGCGTGATCGTC 20278 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | |||||| Sbjct 20279 TTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20310 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || || || || || ||||| || |||||||| || || || || Sbjct 19862 CGAAGACGCAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTG 19921 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||||||||||||| |||||||| |||||||| |||||||| || | ||| Sbjct 19922 CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGTTGCTGGTCAGGCGGGATGCCT 19981 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| || || ||||| || |||||||| ||||| | ||| || || || || || Sbjct 19982 TCCTTATCTTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCAAGC 20041 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| ||||| | ||||| || || | |||||| Sbjct 20042 GTGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 20082 >seq552 Length=27436 Score = 150 bits (166), Expect = 4e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || |||| ||||| | || || || ||||||||||| |||||||| Sbjct 16600 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 16541 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || |||||||| || | ||| |||||||||||||| || || || || || || Sbjct 16540 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 16481 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| |||| || || || || || ||||| ||||||||||| || ||||| ||||| Sbjct 16480 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAAAG 16421 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 16420 ATCTGCAT 16413 >seq837 Length=16651 Score = 149 bits (164), Expect = 1e-30 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || ||||| || || ||||| || |||||||| || || | ||| | | | || || Sbjct 6236 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAACG-TACGACCGTC 6178 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||||||||||||| |||||||| | || || ||||| || || | ||||||||||| Sbjct 6177 CTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTC 6118 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 |||||| || || |||||||| ||||| | ||| || || || || || |||||||| Sbjct 6117 CTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 6058 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || || |||||||| || || | |||||| || Sbjct 6057 CTTGCCGGTCAGAGTCTTCACGAAGATCTGCATCTT 6022 Score = 147 bits (162), Expect = 5e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || ||||| || || ||||| || |||||||| || || | ||| | | | || || Sbjct 6464 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAACG-TACGACCGTC 6406 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||||||||||||| |||||||| | || || ||||| || || | ||||||||||| Sbjct 6405 CTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTC 6346 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 |||||| || || |||||||| ||||| | ||| || || || || || |||||||| Sbjct 6345 CTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 6286 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || |||||||| || || | |||||| Sbjct 6285 CTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6253 Score = 147 bits (162), Expect = 5e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || ||||| || || ||||| || |||||||| || || | ||| | | | || || Sbjct 6692 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAACG-TACGACCGTC 6634 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||||||||||||| |||||||| | || || ||||| || || | ||||||||||| Sbjct 6633 CTCCAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTC 6574 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 |||||| || || |||||||| ||||| | ||| || || || || || |||||||| Sbjct 6573 CTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 6514 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || |||||||| || || | |||||| Sbjct 6513 CTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6481 >seq422 Length=29202 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| || || | || || Sbjct 14221 AGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCGTCC 14280 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||||||||| |||||||| || || || |||||||| || | |||| Sbjct 14281 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATTCCT 14331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159087930046610