Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20taxon_20totara_20[genbank_20GCA_5F001314375.1_202015- 10-14] 4,314 sequences; 55,580,915 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq552 109 5e-19 seq837 95.1 1e-14 >seq552 Length=27436 Score = 109 bits (120), Expect = 5e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || || || | || || || |||| || ||||| ||||| || || || Sbjct 16600 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 16541 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 || ||||||||||| | || | | ||| |||||| ||||||||| |||| | | | | Sbjct 16540 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 16482 Query 39217 ACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | | | ||| || ||||||||||| |||||| | ||||||||||| || || ||||| Sbjct 16481 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAAA 16422 Query 39276 GATTTGCAT 39284 ||| ||||| Sbjct 16421 GATCTGCAT 16413 >seq837 Length=16651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||| ||| || || || || || || | || || |||| || Sbjct 6234 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAACGTACGACCGTCCTC 6175 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || | ||||||||||||| || | || || |||||| Sbjct 6174 CAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTG 6115 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||||||||| || | ||| | | | || || || ||||||||||| |||||| | | Sbjct 6114 GATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCT 6056 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || ||||| || || || ||||| |||||||| Sbjct 6055 TGCCGGTCAGAGTCTTCACGAAGATCTGCATCTT 6022 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||| ||| || || || || || || | || || |||| || Sbjct 6462 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAACGTACGACCGTCCTC 6403 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || | ||||||||||||| || | || || |||||| Sbjct 6402 CAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTG 6343 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||||||||| || | ||| | | | || || || ||||||||||| |||||| | | Sbjct 6342 GATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCT 6284 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || || ||||| ||||| Sbjct 6283 TGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6253 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||| ||| || || || || || || | || || |||| || Sbjct 6690 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAACGTACGACCGTCCTC 6631 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || | ||||||||||||| || | || || |||||| Sbjct 6630 CAGCTGCTTGCCGGCGAAGATTAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTG 6571 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||||||||| || | ||| | | | || || || ||||||||||| |||||| | | Sbjct 6570 GATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCT 6512 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || || ||||| ||||| Sbjct 6511 TGCCGGTCAGAGTCTTCACGAAGATCTGCAT 6481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429523015834682